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EDITORIAL BOARD RECOMMENDED READINGS

The MaizeGDB Editorial Board is charged with the task of recommending noteworthy maize primary literature on a monthly basis. This list highlights research of interest to maize researchers and is appropriate for use in by journal clubs. The inaugural board was convened in January 2005 by Virginia Walbot. The current year's membership includes: Marja Timmermans, Chief; Kelly Dawe; Jim Holland; Mike Kolomiets; and Damon Lisch. Jane Dorweiler replaced Damon and Mike Scanlon replaced Marja as Chief in June. Below is the Editorial Board's current recommended reading list along with their comments.

Go to another year: 2005 2006 2007 2008

Recommending
Member
CitationFull Text Link
July 2008
Mike Scanlon & Jane Dorweiler Gallavotti et al. (2008) Plant Physiol E-pub ahead of print
  The relationship between auxin transport and maize branching

Exquisite images are featured in this use of transgenic maize plants to illustrate that mechanisms of branching in maize and Arabidopsis are conserved, and these same mechanisms can also explain the unique branches (spikelet pair meristems and spikelet meristems) found in grass inflorescences.
Yes
Jim Holland Warburton et al. (2008) Crop Sci 48:617-624
  Genetic diversity in CIMMYT nontemperate maize germplasm: landraces, open pollinated varieties, and inbred lines

An SSR survey of 24 Mexican landraces and 261 CIMMYT inbred lines reveals that the CIMMYT lines capture a large proportion of the genetic diversity represented in the landraces, and therefore represent a valuable resource for genetic diversity studies. The landraces, however, do contain some unique alleles that are likely not captured in tropical or temperate inbreds, so their maintenance as a genetic resource remains imperative.
Yes
June 2008
Mike Scanlon Hochholdinger et al. (2008) Plant Journal 54:888-898
  The maize (Zea mays L.) roothairless3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield

In a nice example of a developmental gene with major effects on yield, a streamlined PCR-based cloning strategy and massively parallel sequencing are used to clone and characterize the expression of a maize COBRA-like gene required for cell wall expansion in root hairs.
Yes
Jane Dorweiler Barazesh and McSteen (2008) Genetics 179:389-401
  Barren inflorescence1 functions in organogenesis during vegetative and inflorescence development in maize
Yes
Mike Kolomiets Katsir et al. (2008) Proc Natl Acad Sci U S A 105:7100-7105
  COI1 is a critical component of a receptor for jasmonate and the bacterial virulence factor coronatine
Yes
Jim Holland Ducrocq et al. (2008) Genetics 178:2433-2437
  Key impact of Vgt1 on flowering time adaptation in maize: Evidence from association mapping and ecogeographical information

This paper confirms the effect of Vgt1 on flowering time across a diverse sample of maize and demonstrates association between haplotype frequencies at the gene region with latitude and altitude in landraces, suggesting its role in adaptation to environments.
Yes
Damon Lisch Miller et al. (2008) Planta 227:1377-1388
  A maize CONSTANS-like gene, conz1, exhibits distinct diurnal expression patterns in varied photoperiods

A nice demonstration that maize, a day-neutral plant, has an ortholog of the Arabidopsis constans gene that retains a diurnal expression pattern. This suggests that maize domestication involved a modification, rather than the elimination of molecular pathways employed to detect and respond to day length.
Yes
May 2008
Marja Timmermans Zhao et al. (2008) Genetics 178:2133-2143
  The role of regulatory genes during maize domestication: evidence from nucleotide polymorphism and gene expression
Yes
Jim Holland Mikel and Dudley (2006) Crop Science 46:1193-1205
  Evolution of North American dent corn from public to proprietary germplasm

Mikel and Dudley analyzed the plant variety protection (PVP) and patent databases to understand the pedigree relationships among commercial private-sector maize inbreds and public lines. This was the first paper to shed light on the derivation and relationships among proprietary lines, and this information is key now that PVP has expired on more than 100 formerly proprietary inbreds and they have become available for use without restriction.
Yes
Mike Kolomiets Wan et al. (2008) Plant Cell 20:471-481
  A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis
Yes
Damon Lisch Makarevitch et al. (2007) Genetics 177:749-760
  Natural variation for alleles under epigenetic control by the maize chromomethylase Zmet2

Fungal-derived chitin has long been known as an extremely potent elicitor of plant defense responses. This paper identifies that chitin-induced signaling leading to defense activation requires the host LysM receptor-like protein supposedly likely acting as a part of the chitin receptor complex. Additionally, this study suggests a possible evolutionary relationship between the chitin and Nod factor perception mechanisms.
Yes
Kelly Dawe Lee et al. (2007) Plant Physiology 145:1294-300
  Novel plant transformation vectors containing the superpromoter

The authors describe a versatile promoter for driving gene expression in transgenic maize.
Yes
April 2008
Jim Holland Yu et al. (2008) Genetics 178:539-551
  Genetic design and statistical power of nested association mapping in maize
Yes
Kelly Dawe Zheng et al. (2008) Nature Genetics 40:367-372
  A phenylalanine in DGAT is a key determinant of oil content and composition in maize

The authors have tracked down an important high-oil QTL gene.  The high-oil allele was then introduced into plants and shown to condition the same phenotype ectopically.  A nice story that combines sophisticated genomics with an applied goal.
Yes
Marja Timmermans Baker and Braun (2008) Plant Physiology 146:1085-1097
  Tie-dyed2 functions with Tie-dyed1 to promote carbohydrate export from maize leaves
Yes
Mike Kolomiets Sindhu et al. (2008) Proc Natl Acad Sci U S A 105:1762-1767
  A guardian of grasses: Specific origin and conservation of a unique disease-resistance gene in the grass lineage

This paper describes the findings that suggest that the function of the maize Hm1 resistance gene may be evolutionary conserved in other grasses to protect these plants against the lethal fungal necrotrophic pathogen Cochliobolus carbonum.
Yes
Damon Lisch Dooner and He (2008) Plant Cell 20:249-258
  Maize genome structure variation: interplay between retrotransposon polymorphisms and genic recombination

A typically elegant demonstration of the effects of retrotransposon clusters on recombination frequency in maize. The authors found a general inverse relationship between the frequencies of crossovers and heterologies for very closely linked markers.
Yes
March 2008
Kelly Dawe Zhang et al. (2008) Plant Cell 20:25-34
  Epigenetic modification of centromeric chromatin: hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize

This paper supports the idea that centromeric (kinetochore) domains are very different from flanking pericentromeric regions. A variety of evidence suggests that centromere cores support transcription and lack nearly all features of classical heterochromatin.
Yes
Jim Holland Lough et al. (2008) Genetics 178:47-55
  Mitochondrial DNA transfer to the nucleus generates extensive insertion site variation in maize

The maize genome keeps getting weirder! Lough et al. identified numerous large mitochondrial insertions in the B73 genome with FISH. Then they surveyed several other common maize lines and found tremendous variability among inbreds for presence and absence of a large number of mitochondrial insertions.
Yes
Mike Kolomiets Chintamanani et al. (2008) Molecular Plant-Microbe Interactions 21:79-86
  Distinct mechanisms govern the dosage-dependent and developmentally regulated resistance conferred by the maize Hm2 gene
Yes
Marja Timmermans Candela et al. (2008) Nature Reviews Genetics 9:192-203
  The art and design of genetic screens: maize
Yes
Damon Lisch Guo et al. (2008) Plant Molecular Biology 66:551-563
  Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) Reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue
Yes
February 2008
Kelly Dawe Schmer et al. (2008) Proc Natl Acad Sci U S A 105:464-469
  Net energy of cellulosic ethanol from switchgrass

This is a nice summary of why switchgrass is receiving so much attention. They emphasize that while maize is not as efficient as switchgrass for this purpose, it serves as a model for how to improve and manage a grass crop.
Yes
Jim Holland Harjes et al. (2008) Science 319:330-333
  Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification
Yes
Mike Kolomiets Gao et al. (2008) Molecular Plant-Microbe Interactions 21:98-109
  Maize 9-Lipoxygenase ZmLOX3 controls development, root-specific expression of defense genes, and resistance to root-knot nematodes

The value of this study is that : 1. It describes for the first time (for any plant lipoxygenases) that a root-expressed lipoxygenase has a function in suppressing basal defense responses mediated by all three major hormones (salicylic acid, jasmonic acid and ethylene) in roots presumably to allow the maize seed to germinate and grow normally. 2. This is the first ever report providing genetic evidence for a function of a lipoxygenase in resistance to nematodes.
Yes
Damon Lisch Li et al. (2008) Genetics 178:57-66
  Role of RAD51 in the repair of MuDR-induced double-strand breaks in maize (Zea mays L.)
Yes
January 2008
Kelly Dawe Qu et al. (2008) Plant Physiology 146:189-199
  A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants
Yes
Jim Holland Wisser et al. (2006) Phytopathology 96:120-129
  The genetic architecture of disease resistance in maize: a synthesis of published studies
Yes
Mike Kolomiets Djonovic et al. (2007) Plant Physiology 145:875-889
  A proteinaceous elicitor Sm1 from the beneficial fungus Trichoderma virens is required for induced systemic resistance in maize
Yes
Damon Lisch Carlson et al. (2007) PLoS Genetics 3:1965-1974
  Meiotic transmission of an in vitro-assembled autonomous maize minichromosome
Yes
Kelly Dawe &
Marja Timmermans
Chuck et al. (2007) Nature Genetics 39:1517-1521
  The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1
Yes
Gael Pressoir
(from 2007)
Blanc et al. (2006) Theoretical and Applied Genetics 113:206-224
  Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize
Yes


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Last updated 12:27 pm, Jul 02, 2008.

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