Species (selects species-specific splice site model) human mouse rat chicken Drosophila nematode yeast Aspergillus Arabidopsis maize generic

STEP 2:    Input genomic DNA sequence

Sequences should be in the one-letter-code ({a,b,c,g,h,k,m,n,r,s,t,u,w,y}), upper or lower case; all other characters are ignored during input. Multiple sequence input is accepted in FASTA format (sequences separated by identifier lines of the form “>SQ;name_of_sequence comments”) or in GenBank format.

Paste your genomic DNA sequence here:

... or upload your sequence file (specify file name):

... or type in the GenBank accession number of your sequence:

Select format: plain FASTA GenBank

Sequence name: (optional, used in plain sequence format only)
From position: to position: Strand: original reverse both

Spliced Alignment: The output will show an optimal threading of a significantly matching cDNA/EST sequence into the genomic DNA by aligning putative exons only and displaying putative introns as (long) gaps in the cDNA/EST.

Select pre-processed EST database NOT SET All plants All monocots All dicots Arabidopsis alfalfa barley beet tree cotton upland cotton ice plant liverwort L.japonicus L.hirsutum L.pennellii maize M.truncatula oat pine potato rice rye sorghum S.propinquum soybean tomato wheat Drosophila C.elegans OR paste your own cDNA/EST sequence(s) here ( FASTA format ):

... and/or upload your cDNA/EST sequence file (specify file name):

Select "Submit" to send the job to the server. By default, output will be posted to your browser. You may select to have the ouput sent to you by email instead. Selection of this option is advised in the rare case that output posting is slow due to server overload.

Click here to send the output to this email address:
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