A HANDY REFERENCE FOR DECIPHERING CURRENT MAPS AND THE VARIOUS NEIGHBORS MAPS
                                    (from M. Schaeffer's PAG-XV Presentation)

Current Maps
IBM2
IBM2 FPC0507
   Genetic coordinates for loci in anchored contigs
      FPC
         -anchored contigs
         -markers with 2 BAC hits in the contig
         -create locus name based on probe, typically an overgo
         -consensus band (CB) coordinates for each locus
      IBM2
         -genetic coordinates for IBM2 anchors
      Oher genetic maps
         -some FPC marked sites match a mapped locus, based on sequence, bin, and flanking markers
IBM2 2005 Neighbors
   Described below
IBM2 2005 Neighbors Frame
   Described below

Neighbors
IBM neighbors v.2
   3,410 loci, frame is IBM1, computed by hand

IBM2 neighbors
   5,696 loci, frame is IBM2, computed by algorithm

IBM2 2004 neighbors
   5,844 loci, frame is IBM2, refined by IBM2FPC0402 genetic neighbors

Current Version: IBM2 2005 neighbors
   34,581 loci, frame is IBM2, order refined by IBM2FPC0507, includes both genetic and BAC mapped loci

Genetic maps included:
IBM-94 maps: IBM ISU Map4; IBM GNP2004; cIBM2005
IBM-302 maps*: INDEL (MMP); IBM1
SSR: SSR Tx303xCO159 2002; SSR T218xGT119 2002
BNL mapping population: CU 99; CU 98; BNL 96 frame; BNL 2002
LHRF GNP*
Genetic 2005
MITE*

*connotes very high resolution mapping panel

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Last updated 11:53 am, Jan 29, 2007.