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CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The most recent updates can be found on our curation site or by clicking the Most Recent Data option in the menu below.


         Recommended Genes

Most recent data | Six months | One year | All time

New or updated genes since one year ago. The cutoff date is March 14th, 2009

Last UpdateGeneFull Name : DescriptionChromosome
or Bin		Recent ReferenceOrthologsUpdate information
16 days agoadf3 actin depolymerizing factor3: leaf cDNA similar to vertebrate actin polymerization/depolymerization factors, not expressed in pollen; expressed in E. coli; two copies detected in Southerns and by one overgo (PCO115125a in ctg64, 1L; PCO115125b in ctg204, 5S), which are syntenous regions.
1.11
 Jiang, CZ et al. 1997. Plant J 12:1035-1043     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: February 26th, 2010
16 days agorgd2 ragged seedling2: mutant expression is variable from reduced midrib/moderately narrow leaf to filamentous or even radial leaves
1.04
 Henderson, D et al. 2006. Genesis 44:372-382     Reference: February 25th, 2010
Variation: February 26th, 2010
16 days agoffm1 filifolium1: mutants develop narrow leaves on dwarfed shoots
 
 Mellor, E A; Langdale, J. 2009. Am J Bot 96:1594-1602     Reference: February 26th, 2010
Variation: February 26th, 2010
17 days agonl2 narrow leaf2: dominant Nl2, leaves narrow and distorted
5.03
 Neuffer, MG. 1990. MNL 64:51-52     Reference: September 1st, 2003
Variation: February 25th, 2010
17 days agothi2 thiamine biosynthesis2: cDNA closely similar to sequence of thi1, which complements yeast thi4progressive elimination of leaf blade, successive younger leaves most affected; generally tassellessmRNA differentially diminished in early- vs. late-senescing lines
3.09
 Scanlon, MJ; Freeling, M. 1996. Maize Genetics Conference Abstracts 38     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: February 25th, 2010
19 days agoan2 kaurene synthase2: encodes ent-kaurene synthase, a copalyl diphosphate synthase protein having close identity with An1 gene product; duplicate function explains why an1 plants are not fully dwarfed
1.04
 Harris, LJ, et al. 2005. Plant Mol Biol. 59:881-884     Reference: February 23rd, 2010
Gene Product: September 1st, 2003

Recommended by Ed Coe:
January 8th, 2008
19 days agormr7 required to maintain repression7: This gene was found as a "required to maintain repression" or "rmr" mutant in the Hollick lab. Subsequent cloning identified it as a likely subunit of the plant specific RNA polymerase D. This protein is called NRPD2a in Arabidopsis. Lisa Harper, 2010
2.02
 Stonaker, J; Lim, J; Erhard, Karl; Hollick, J. 2009. PLoS Genet. 5:e1000706     Reference: February 17th, 2010
Variation: February 23rd, 2010
20 days agocenpc1 centromere protein C 1: cDNA sequence
3.09
 Du, Y; Topp, CN; Dawe, RK. 2010. PLoS Genet. 6:e1000835     Reference: February 22nd, 2010
Gene Product: September 1st, 2003
23 days agod1 dwarf plant1: andromonoecious, short, compact plants; responds to gibberellins; d1-t intermediate in height
3.03
 Khavkin, EE. 1998. Genetic control of plant morphogenesis. Fiziol Rast 45:676-689     Reference: April 3rd, 2008
Gene Product: September 1st, 2003
Variation: February 19th, 2010
23 days agots*-br tassel seed*-branched: tassel seed branched ear
 
     Variation: February 19th, 2010
27 days agoal1 albescent plant1: variably cross-banded to white leaves, pale yellow endosperm, some alleles viviparous; y3 is allelic
2.01
 Troxler, RF et al. 1969. Plant Physiol 44:1609-1618     Reference: February 15th, 2010
Variation: November 27th, 2006
27 days agohex1 hexokinase1: electrophoretic mobility; null allele is known; cytosolic; monomeric
3.02 - 3.03
 Wendel, JF et al. 1985. MNL 59:88     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: February 15th, 2010
27 days agohex3 hexokinase3:
8.05
     Variation: February 15th, 2010
30 days agoben1 bentazon resistance1: Dominant Ben1 resistant, with Ben2recessive susceptibility to nicosulfuron (Accent) and mesotrione herbicides
5.01
 Williams, M et al. 2006. Maize Genetics Conference Abstracts 48:P26     Reference: February 12th, 2010
Variation: February 12th, 2010
32 days agobn1 brown aleurone1: yellowish brown aleurone color
7.04 - 7.04
 Graner, E. 1947. Rev Agric Brazil 22:42-54     Reference: February 10th, 2010
Variation: September 21st, 2007
32 days agovp2 viviparous2: embryo fails to become dormant; white endosperm, white seedling; anthocyanins unaffectedvp2 encodes or regulates the expression of 4-hydroxyphenylpyruvate dioxygenase
5.03
 Moreno, A et al. 2005. Maydica 50:549-558     Reference: June 24th, 2009
Variation: February 10th, 2010
32 days agomet1 DNA methyl transferase1: cDNA and genomic clones; single copy
7.01
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2006
Variation: February 10th, 2010
33 days agomet2 DNA methyl transferase2:
10.06
 Makarevitch, I, et al. 2007. Genetics. 177:749-760     Reference: February 9th, 2010
Gene Product: September 1st, 2006
Variation: September 1st, 2003
33 days agomet5 DNA methyl transferase5:
2.02
 Papa, CM et al. 2001. Plant Cell 13:1919-1928     Reference: February 9th, 2010
Gene Product: September 1st, 2006
Variation: September 1st, 2003
33 days agomet4 DNA methyl transferase4:
8.05
     Variation: February 9th, 2010
36 days agombd121 methyl binding domain121:
4.08
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: June 22nd, 2006
Variation: February 6th, 2010
36 days agombd123 methyl binding domain123:
10.06
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Variation: February 6th, 2010
36 days agombd110 methyl binding domain110:
 
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Variation: February 6th, 2010
37 days agombd115 methyl binding domain115:
1.09
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Variation: February 5th, 2010
37 days agombd117 methyl binding domain117:
2.07
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Variation: February 5th, 2010
37 days agombd120 methyl binding domain120:
6.05
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Variation: February 5th, 2010
37 days agombd122 methyl binding domain122:
4.04
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Variation: February 5th, 2010
39 days agombd109 methyl binding domain109:
5.03
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: June 22nd, 2006
Variation: September 1st, 2003
39 days agombd108 methyl binding domain108:
7.03
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: June 22nd, 2006
Variation: September 1st, 2003
39 days agombd119 methyl binding domain119:
1.06
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: June 22nd, 2006
Variation: September 11th, 2007
39 days agombd116 methyl binding domain116:
4.09
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: June 22nd, 2006
Variation: September 11th, 2007
39 days agombd113 methyl binding domain113:
10.04
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: June 22nd, 2006
Variation: February 3rd, 2010
39 days agombd111 methyl binding domain111:
2.07
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: June 22nd, 2006
Variation: January 29th, 2010
40 days agotgz15 transglutaminase15:
2.04
 Villalobos, E; Santos, MA; Talavera, D; Rodriguez-Falcon, M; Torne, JM. 2004. Gene. 336:93-104     Reference: February 1st, 2010
Gene Product: July 29th, 2005
Variation: February 2nd, 2010
40 days agotgz21 transglutaminase21:
2.04
 Villalobos, E; Santos, MA; Talavera, D; Rodriguez-Falcon, M; Torne, JM. 2004. Gene. 336:93-104     Reference: February 1st, 2010
Gene Product: July 29th, 2005
Variation: February 2nd, 2010
41 days agolg1 liguleless1: ligule and auricle missing; leaves upright, enveloping
2.01
 Gao, H, et al. 2009. Plant J. 61:176-187     Reference: February 1st, 2010
Gene Product: September 1st, 2003
Variation: May 19th, 2006
43 days agomwp1 milkweed pod1: leaf development transcription factor controlling abaxial cell fate, delineation of leaf margins, initiation of vascular and photosynthetic tissues.
7.02
 Candela, H; Johnston, R; Gerhold, A; Foster, T; Hake, S. 2008. Plant Cell. 20:2073-2087     Reference: May 15th, 2009
Gene Product: September 8th, 2008
Variation: January 30th, 2010

Recommended by Mary Schaeffer (Polacco):
September 8th, 2008
44 days agotfIIB1 transcription initiation factor1:
9.07
 Lagrange, T et al. 2003. Mol Cell Biol 23:3274-3286     Reference: January 29th, 2010
Gene Product: September 7th, 2005
47 days agowrp1 wrinkled plant1: dominant Wrp1 plants dwarf, leaves and culm longitudinally corrugated; dosage effect
2.06 - 2.07
 Neuffer, MG. 1993. MNL 67:33     Reference: September 1st, 2003
Variation: January 26th, 2010
47 days agomybst1 single-repeat Myb protein1:
9.04
 Mercy, I et al. 2003. Zea mays ZmMybst1 cDNA, encodes a single Myb-repeat protein with the VASHAQKYF motif. J Exp Bot 54:1117-1119     Reference: January 26th, 2010
Gene Product: June 7th, 2005
Variation: January 26th, 2010
47 days agogols1 galactinol synthase1: Similar to water stress-induced protein of rice (per Baysdorfer, C.)
1.03
 Zhao, T; Martin, D; Meeley, R; Downie, B. 2004. Physiol Plant. 121:647-655     Reference: August 11th, 2005
Gene Product: June 24th, 2005
Variation: January 26th, 2010
47 days agogols2 galactinol synthase2:
 
 Zhao, T; Martin, D; Meeley, R; Downie, B. 2004. Physiol Plant. 121:647-655     Reference: August 11th, 2005
Gene Product: June 24th, 2005
Variation: January 26th, 2010
47 days agogols3 galactinol synthase3:
9.04
 Zhao, T; Martin, D; Meeley, R; Downie, B. 2004. Physiol Plant. 121:647-655     Reference: August 11th, 2005
Gene Product: June 24th, 2005
Variation: January 26th, 2010
49 days agodbf1 DRE-binding protein 1:
1.07
 Kizis, D and Pages, M. 2002. Plant J 30:679-689     Reference: January 24th, 2010
Gene Product: July 26th, 2005
Variation: July 27th, 2005
49 days agodbf2 DRE-binding protein 2:
9.04
 Kizis, D and Pages, M. 2002. Plant J 30:679-689     Reference: January 24th, 2010
Gene Product: July 26th, 2005
51 days agobx4 benzoxazinone synthesis4: seedling-specific; cDNA and genomic clones; gene-specific probe
4.01
 Persans, M et al. 2001. Plant Physiol 125:1126-1138     Reference: January 22nd, 2010
Gene Product: September 1st, 2003
Variation: September 1st, 2003
51 days agobx5 benzoxazinone synthesis5: seedling specific cDNA CYP71C3 (mpik7), gene-specific probe
4.01
 Persans, M et al. 2001. Plant Physiol 125:1126-1138     Reference: January 22nd, 2010
Gene Product: September 1st, 2003
Variation: June 6th, 2006
51 days agodbf3 DRE-binding protein3:
2.07
 Jiang, YX et al. 2004. Nucl Acid Res 32:65-71     Reference: January 22nd, 2010
Gene Product: June 24th, 2005
Variation: January 22nd, 2010
51 days agocyp12 cytochrome P450 12:
2.06
 Persans, M et al. 2001. Plant Physiol 125:1126-1138     Reference: January 22nd, 2010
Variation: January 22nd, 2010
51 days agocyp11 cytochrome P450 11: Transcript induced by naphthalic anhydride or triasulfuron herbicide
3.09
 Persans, M et al. 2001. Plant Physiol 125:1126-1138     Reference: January 22nd, 2010
Variation: January 22nd, 2010
53 days agoache1 acetylcholinesterase1:
7.04
 Sagane, Y et al. 2005. Plant Physiol 138:1359-71     Reference: January 20th, 2010
Gene Product: June 6th, 2006
55 days agorld2 rolled leaf2: paralogous locus of rld1
1.01
 Nogueira, FTS; Madi, Shahinez; Chitwood, DH; Juarez, MT; Timmermans, M. 2007. Genes Dev. 21:750-5     Reference: May 26th, 2008
Variation: January 18th, 2010
57 days agoamya3 alpha amylase3: aleurone cDNA pMAs5, 94% similarity to rice alpha amylase; possibly identical to amy1
2.07
 Young, TE; DeMason, DA; Close, TJ. 1994. Plant Physiol 105:759-760     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: January 16th, 2010
59 days agovp5 viviparous5: cDNA, strongest hybridization to this site; other sites are near o2, bnl17.25 and dup103; encodes a 2-step phytoene desaturase; SSR umc1070like vp2
1.02 - 1.02
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: January 14th, 2010
60 days agoadss1 adenylosuccinate synthetase:
1.02
 Fonne-Pfister, R et al. 1996. Proc Natl Acad Sci, USA 93:9431-9436     Reference: January 13th, 2010
Gene Product: February 12th, 2008
Variation: January 13th, 2010
65 days agormr2 required to maintain repression 2:
 
 Hollick, J and Chandler, V. 2001. Genetics 157:369-378     Reference: September 1st, 2003
Variation: January 8th, 2010
67 days agopba1 Threonine endopeptidase1:
1.01
 Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194     Reference: January 11th, 2009
Gene Product: January 6th, 2010
Variation: September 25th, 2007
68 days agoabph1 aberrant phyllotaxy1: decussate leaves and ear shoots (opposite at nodes) frequent; variable, recessive
2.03
 Lee, BH, et al. 2009. Plant Physiol. 150:205-16     Reference: January 5th, 2010
Gene Product: April 20th, 2009
Variation: September 1st, 2003
68 days agob1 colored plant1: dominant B1 plants have anthocyanin in major plant tissues; some alleles affect aleurone and embryo color; regulates flavonoid enzymes; SSR umc1776
2.03
 Louwers, M, et al. 2009. Plant Cell. 21:832-42     Reference: January 5th, 2010
Gene Product: September 1st, 2003
Variation: September 1st, 2003
68 days agod8 dwarf plant8: Dominant D8 plants resemble d1; extreme alleles not responsive to gibberellins.
1.09
 Camus-Kulandaivelu, L, et al. 2008. Genetics. 180:1107-1121     Reference: January 5th, 2010
Gene Product: February 12th, 2007
Variation: August 30th, 2007
68 days agoo2 opaque endosperm2: like o1; high lysine content; regulates b-32 protein (see rip1); reduced lysine degradation (lysine-ketoglutaric reductase); SSRs phi057, 112
7.01
 Locatelli, S; Piatti, P; Motto, M; Rossi, V. 2009. Plant Cell. 21:1410-27     Reference: January 5th, 2010
Gene Product: September 1st, 2003
Variation: September 1st, 2003
68 days agotb1 teosinte branched1: many tillers; ear branches tassel-like; affects apical dominance
1.09
 Camus-Kulandaivelu, L, et al. 2008. Genetics. 180:1107-1121     Reference: January 5th, 2010
Gene Product: January 31st, 2005
Variation: June 26th, 2009
68 days agoocl4 outer cell layer4:
1.05 - 1.06
 Vernoud, V, et al. 2009. Plant J. 59:883-94     Reference: January 5th, 2010
Gene Product: September 1st, 2003
Variation: September 1st, 2003
68 days agobde1 bearded-ear1: floral development MADS box transcription factor; recessive mutant has silky-polytypic-like ear
5.06
 Thompson, BE, et al. 2009. Plant Cell. 21:2578-90     Reference: January 5th, 2010
Gene Product: October 17th, 2009
Variation: October 7th, 2009
68 days agozag1 Zea AGAMOUS homolog1: amino acid sequence, deduced from cDNA to inflorescence mRNA, 61% identical to Arabidopsis floral homeotic gene protein AG1; expression strong in female inflorescence; possibly pt1; SSR umc1187
6.05
 Thompson, BE, et al. 2009. Plant Cell. 21:2578-90     Reference: January 5th, 2010
Gene Product: September 1st, 2003
Variation: June 29th, 2005
68 days agomez1 enhancer of zeste1:
6.01
 Haun, W; Danilevskaya, O; Meeley, R; Springer, N. 2009. Genetics. 181:1229-37     Reference: January 5th, 2010
Gene Product: September 1st, 2003
Variation: September 1st, 2003
80 days agolc1 red leaf color1: dominant Lc1 confers anthocyanin in coleoptile, nodes, auricle, leaf blade, etc. (compare Sn1 and Hopi1); displaced r1 gene
10.06
 Chawla, HS et al. 1999. Expression of anthocyanin pigmentation in wheat tissues transformed with anthocyanin regulatory genes. Curr Sci 76:1365-1370     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: December 24th, 2009
80 days agosn1 scutellar node color1: anthocyanin in coleoptile, nodes, auricle, leaf blade, etc. (compare Lc1 and Hopi1)
10.06
 Gavazzi, G et al. 1990. Genetics 125:193-199     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: December 24th, 2009
80 days agohopi1 hopi r1/b1 family member1: (was r1-ch:Hopi) r1/b1 gene family member, 4.5 cM from r1; dominant confers pigmentation on germination in light to aleurone and scutellum, light- or Pl1-dependent in pericarp, and pigment in plant parts. Possibly same as sn1 and/or lc1.
10.05 - 10.06
 Petroni, K. 2000. Genetics 155:323-336     Reference: September 1st, 2003
Variation: December 24th, 2009
81 days agoda1 dilute aleurone1: aleurone color diluted; linkage data unclear; compare dominant Inr1, located to chromosome 10
9.00 - 9.08
 Eyster, WH. 1931. J Hered 22:225     Reference: December 23rd, 2009
Variation: September 1st, 2003
81 days agoin1 intensifier1: intensifies aleurone anthocyanin pigments; In1-D dominant dilute; sequence similar to r1/b1
7.02
 Fraser, AC. 1924. J Hered 15:119-124     Reference: December 23rd, 2009
Variation: September 1st, 2003
81 days agoms1 male sterile1: anthers shriveled, not usually exserted; affected at microspore vacuolation
6.02
 Fraser, AC. 1933. J Hered 24:41-46     Reference: December 23rd, 2009
Variation: September 1st, 2003
81 days agoms3 male sterile3: anthers shrivelled; not usually exserted.
3.05 - 3.06
 Eyster, WH. 1931. J Hered 22:117-119     Reference: December 23rd, 2009
Variation: September 1st, 2003
81 days agosi1 silky1: (aka ts8, ms-si) multiple silks in ear; sterile tassel with silks
6.01
 Fraser, AC. 1933. J Hered 24:41-46     Reference: December 23rd, 2009
Variation: September 1st, 2003
82 days agots4 tasselseed4: encodes miRNA that targets ts6 and sid1; tassel compact silky mass, upright, with pistillate and staminate florets; ear silky and proliferated
3.05 - 3.05
 Hayes, HK; Brewbaker, HE. 1928. J Hered 19:560-567     Reference: December 22nd, 2009
Variation: January 2nd, 2006

Recommended by George Chuck:
September 25th, 2007
82 days agobs1 barren sterile1: Plant weak, with little or no tassel and usually with only a vestige of pistillate inflorescence, shank, husks
 
 Woodworth, CM. 1926. J Hered 17:405-411     Reference: December 22nd, 2009
Variation: September 1st, 2003
82 days agoh1 soft starch1: endosperm opaque, starchy (like floury), recessive to horny
3.04
 Mumm, WJ and Woodworth, CM. 1930. Heritable characters in maize: xxxvi - a factor for soft starch in dent corn. J Hered 21:503-505     Reference: December 22nd, 2009
Variation: September 1st, 2003
82 days agoms2 male sterile2: like ms1; affected between vacuolation and pore formation
9.03
 Eyster, WH. 1931. J Hered 22:99-102     Reference: December 22nd, 2009
Variation: September 1st, 2003
82 days agosk1 silkless ears1: pistils abort, no silks
2.03 - 2.04
 Jones, DF. 1925. J Hered 16:339-341     Reference: December 22nd, 2009
Variation: September 1st, 2003
82 days agotp1 teopod1: dominant Tp1 plants have many tillers, narrow leaves, many small partially podded ears, tassel simple
7.03
 Lindstrom, EW. 1925. J Hered 16:135-140     Reference: December 22nd, 2009
Variation: September 1st, 2003
83 days agorf9 restorer of fertility9: restorer of fertility to CMS-S normal allele in A619 and some other Lancaster Surecrop lines; not allelic to rf3
 
 Gabay-Laughnan, S et al. 2009. Genetics 182:91-103     Reference: December 21st, 2009
Variation: October 26th, 2006
3 months agoga2 gametophyte factor2: Ga2 pollen grains are competitively superior to ga2 on Ga2 silks.
5.04
 Longley, AE. 1961. Genetics 46:641-647     Reference: September 1st, 2003
Variation: December 11th, 2009
3 months agokn1 knotted1: dominant Kn1 plants have localized proliferation of tissue at vascular bundles on leaf
1.10
 Ramirez, Julio; Bolduc, N; Lisch, D; Hake, S. 2009. Plant Physiol. 151:1878-1888     Reference: December 9th, 2009
Variation: September 1st, 2003
3 months agocl1 chlorophyll1: white to green seedlings, depending upon alleles of modifier clm1; pale yellow endosperm
3.04
 Poethig, RS. 1985. MNL 59:86     Reference: October 11th, 2004
Variation: December 4th, 2009
3 months agoy9 pale yellow9: pale endosperm, slightly viviparous; green to pale green seedlings and plants; accumulates 9,15,9'-tri-cis-zeta carotene in dark
10.03 - 10.03
 Jackson, JD. 2008. MNL 82:31     Reference: December 4th, 2009
Gene Product: December 28th, 2007
Variation: October 26th, 2007
3 months agoP plant color component at R1: anthocyanin pigmentation in seedling leaf tip, coleoptile, anthers
 
 Robbins, TP et al. 1991. Genetics 129:271-283     Reference: December 3rd, 2009
Gene Product: September 1st, 2003
Variation: December 3rd, 2009
3 months agor1 colored1: regulates anthocyanin pathway; dominant R1 (S element) confers function in aleurone; dominants represented by R1-r or r1-r (P element) confer function in anthers, leaf tip, brace roots, etc.
10.06
 Robbins, TP et al. 1991. Genetics 129:271-283     Reference: December 3rd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 months agoS seed color component at R1: anthocyanin pigmentation in aleurone; (see also cms-S)
10.06
 Robbins, TP et al. 1991. Genetics 129:271-283     Reference: December 3rd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 months agophs1 poor homologous synapsis1:
9.00
 Ronceret, A; Doutriaux, M; Golubovskaya, I; Pawlowski, W. 2009. Proc Natl Acad Sci, USA. 0:10.1073/pnas.0906273106     Reference: November 23rd, 2009
Gene Product: September 5th, 2006
3 months agowtf1 what's this factor?1: chloroplast group II intron splicing
8.03
 Barkan, A. 2009. maize gene review DOI-wtf1:unassigned   AT4G01037 (TAIR)
LOC_Os05g49610 (MSU/TIGR)
LOC_Os05g49610 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 21st, 2009
Variation: May 9th, 2009

Recommended by Alice Barkan:
November 11th, 2008
3 months agoppr5 pentatricopeptide repeat 5: stabilizes the chloroplast unspliced trnG precursor
4.08
 Barkan, A. 2009. maize gene review DOI-ppr5:unassigned   AT4G39620 (TAIR)
LOC_Os02g51480 (MSU/TIGR)
LOC_Os02g51480 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: May 9th, 2009

Recommended by Alice Barkan:
November 11th, 2008
3 months agoppr10 pentatricopeptide repeat10: pale yellow green, non-photosynthesizing seedling lethal; atpH and psaJ mRNA stabilization
6.02
 Barkan, A. 2009. maize gene review DOI-ppr10:unassigned   AT2G18940 (TAIR)
LOC_Os05g19380 (MSU/TIGR)
LOC_Os05g19380 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: May 9th, 2009

Recommended by Alice Barkan:
November 11th, 2008
3 months agots6 tasselseed6: Recessive alleles have more than two florets per spikelet, and reversed germ orientation. Dominant Ts6 tassels are compact, pistillate to mixed and ears have irregular kernel placement.
1.11
 Chuck, G. 2009. maize gene review DOI:unassigned     Reference: November 17th, 2009
Gene Product: July 24th, 2009
Variation: September 1st, 2003

Recommended by George Chuck:
September 25th, 2007
3 months agoppr4 pentatricopeptide repeat 4: trans-splicing chloroplast rps12 mRNA
 
 Barkan, A. 2009. maize gene review DOI-ppr4:unassigned   AT5G04810 (TAIR)
LOC_Os04g58780 (MSU/TIGR)
LOC_Os04g58780 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 24th, 2009
Variation: July 24th, 2009

Recommended by Alice Barkan:
August 10th, 2009
3 months agocrs1 chloroplast RNA splicing1: pale green seedling lethal; chloroplast ATP synthase null; promotes atpF intron splicing
1.07
 Barkan, A. 2009. maize gene review DOI-crs1:unassigned   AT5G16180 (TAIR)
LOC_Os08g27150 (MSU/TIGR)
LOC_Os08g27150 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: May 19th, 2005
3 months agocrs2 chloroplast RNA splicing2: albino to very pale green seedling lethals; chloroplastic group II intron splicing
8.02
 Barkan, A. 2009. maize gene review DOI-crs2:unassigned   AT5G16140 (TAIR)
LOC_Os01g04130 (MSU/TIGR)
LOC_Os01g04130 (Gramene) 		Reference: November 17th, 2009
Gene Product: June 21st, 2005
Variation: June 29th, 2005
3 months agocsy1 chloroplast SecY-1: pale yellow seedling lethal; membrane protein translocon
5.03
 Barkan, A. 2009. maize gene review DOI-csy1:unassigned   AT2G18710 (TAIR)
LOC_Os08g15460 (MSU/TIGR)
LOC_Os08g15460 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: July 22nd, 2009
3 months agoafd1 absence of first division1: male and female sterility; early meiosis
6.07
 Wang, RC et al. 2009. maize gene review DOI-afd1:unassigned   AT5G05490 (TAIR)
LOC_Os05g50410 (MSU/TIGR)
LOC_Os05g50410 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 30th, 2009
Variation: July 30th, 2009
3 months agobd1 branched silkless1: ear silkless with indeterminate branches at base; tassel proliferated, bushy
7.05
 Chuck, G. 2009. maize gene review DOI-bd1:unassigned   At5g18560 (TAIR)
LOC_Os07g47330 (MSU/TIGR)
LOC_Os01g21820 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 27th, 2009
Variation: September 1st, 2003
3 months agowhy1 whirly1: albino to pale green seedling lethal, plastid ribosome deficient
6.01
 Barkan, A. 2009. maize gene review DOI-why1:unassigned   AT2G0274 (TAIR)
LOC_Os0605350 (MSU/TIGR)
LOC_Os0605350 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: May 9th, 2009
3 months agocrs4 chloroplast RNA splicing4: pale yellow green seedling lethal; splicing of ndhA and ndhB transcprits
 
 Barkan, A. 2009. maize gene review DOI-crs4:unassigned     Reference: November 17th, 2009
Gene Product: July 24th, 2009
Variation: July 24th, 2009
3 months agosmu2 suppressors of mec-8 and unc-52 (C.elegans): non-organellar pre-mRNA splicing
10.00
 Chung, T et al. 2009. Plant Physiol 151:1498-1512     Reference: November 17th, 2009
Gene Product: September 22nd, 2009
Variation: November 17th, 2009
3 months agora2 ramosa2: tassel many-branched, upright, not conical like ra1; irregular kernel placement
3.03 - 3.03
 Vollbrecht, E; Hake, S. 2009. maize gene review DOI:Unassigned   AT5G63090 (TAIR)
LOC_Os01g07480 (MSU/TIGR)
LOC_Os01g07480 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 27th, 2009
Variation: July 27th, 2009
3 months agocsr1 chloroplast srp54 receptor1: pale yellow green seedling lethal; thylakoid protein targeting
10.06
 Barkan, A. 2009. maize gene review DOI-csr1:unassigned   AT2G45770 (TAIR)
LOC_Os01g72800 (MSU/TIGR)
LOC_Os01g72800 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 23rd, 2009
Variation: May 31st, 2005
3 months agocrp1 chloroplast RNA processing1: pale green seedling lethal, high chlorophyll leaf fluorescence;cytochromeb6/f and PSI deficient; protein translation
7.03 - 7.06
 Barkan, A. 2009. maize gene review DOI-crp1:unassigned   AT5G42310 (TAIR)
LOC_Os07g36390 (MSU/TIGR)
LOC_Os07g36390 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 23rd, 2009
Variation: July 23rd, 2009
3 months agotha1 thylakoid assembly1: pale green, high chlorophyll fluorescence, seedling lethat; thylakoid protein targeting by sec pathway
3.04
 Barkan, A. 2009. maize gene review DOI-tha1:unassigned   AT4G01800 (TAIR)
LOC_Os01g21820 (MSU/TIGR)
LOC_Os01g21820 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: September 1st, 2003
3 months agoppr2 pentatricopeptide repeat 2: albino seedling lethal; chloroplast translation
7.00
 Barkan, A. 2009. maize gene review DOI-ppr2:unassigned   AT3G06430 (TAIR)
LOC_Os03g19650 (MSU/TIGR)
LOC_Os03g19650 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 23rd, 2009
Variation: February 18th, 2004
3 months agosgo1 shugoshin centromeric cohesion1: male and female sterile; meiosis; centromere cohesion; segregation of sister chromatids.
7.02
 Wang, R et al. 2009. maize gene review DOI-sgo1:unassigned     Reference: November 17th, 2009
Gene Product: July 29th, 2009
Variation: July 29th, 2004
3 months agocaf2 crs2 associated factor2: ivory colored leaf, seedling lethal; RNA splicing
3.04
 Barkan, A. 2009. maize gene review DOI-caf2:unassigned   AT1G23400 (TAIR)
LOC_Os01g21990 (MSU/TIGR)
LOC_Os01g21990 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 23rd, 2009
Variation: September 1st, 2003
3 months agocaf1 crs2 associated factor1: ivory to very pale yellow leaf, seedling lethal, chloroplast intron II splicing
7.02
 Barkan, A. 2009. maize gene review DOI-caf1:unassigned   AT2G20020 (TAIR)
LOC_Os01g31110 (MSU/TIGR)
LOC_Os01g31110 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 23rd, 2009
Variation: September 1st, 2003
3 months agotha4 thylakoid assembly4: pale green seedling lethal; thlakoid protein targeting: tat pathway
1.08
 Barkan, A. 2009. maize gene review DOI:unassigned   AT5G28750 (TAIR)
LOC_Os03g43430 (MSU/TIGR)
LOC_Os03g43430 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: July 22nd, 2009
3 months agotha8 thylakoid assembly8:
2.06
 Barkan, A. 2009. maize gene review DOI-tha8:unassigned     Reference: November 17th, 2009
Variation: July 22nd, 2009
3 months agotdy1 tie-dyed1: Leaf blades develop variegated chlorotic and green regions; chlorotic regions hyperaccumulate carbohydrates.(Braun 2008)
6.07
 Braun, D. 2009. maize gene review DOI-tdy1:unassigned     Reference: November 17th, 2009
Variation: December 18th, 2006
3 months agornc1 ribonuclease III domain protein1: albino to pale green seedling lethal; RNA splicing
3.06
 Barkan, A. 2009. maize gene review DOI-rnc1:unassigned   AT4G37510 (TAIR)
LOC_Os01g5951 (MSU/TIGR)
LOC_Os01g5951 (Gramene) 		Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: March 31st, 2005
3 months agoesr6 embryo surrounding region6: transcript specific to embryo surrounding region near basal endosperm transfer layer
4.09
 Balandin, M et al. 2005. Plant Mol Biol 58:269-282     Reference: November 16th, 2009
Variation: October 14th, 2009
3 months agotcrr1 transfer cell response regulator1: basal endosperm transfer cell specific transcript; encoded protein is found other cells, the conducting cells above the transfer layer, and immature cells adjacent to the transfer layer
4.05
 Muniz, LM; Hueros, G. 2006. Plant J. 48:17-27     Reference: October 9th, 2009
Variation: November 15th, 2009
4 months agoabcf1 ABC family1: transmembrane transport
2.09
 Goodman, CD; Casati, P; Walbot, V. 2004. Plant Cell. 16:1812-1826     Reference: October 31st, 2009
Variation: November 12th, 2009
4 months agomrpa2 multidrug resistance associated protein2: ATP-binding cassette (ABC) transporter
7.02
 Swarbreck, D; Ripoll, P-J; Brown, DA; Edwards, K; Theodoulou, F. 2003. Gene. 315:153-164     Reference: November 6th, 2009
Variation: November 11th, 2009
4 months agomrpa3 multidrug resistance-associated protein3: Transport of anthocyanin into vacuole
9.02
 Goodman, CD; Casati, P; Walbot, V. 2004. Plant Cell. 16:1812-1826     Reference: October 31st, 2009
Variation: November 11th, 2009
4 months agomrpi1 MRP interacting1: C2H2 zinc finger protein
8.08
 Royo, J; Hueros, G. 2009. Planta. 230:807-818   AT4527240 (TAIR)
LOC_Os01g57650 (MSU/TIGR)
LOC_Os01g57650 (Gramene) 		Reference: October 26th, 2009
Variation: November 10th, 2009
4 months agobt2 brittle endosperm2: like bt1; endosperm ADPG pyrophosphorylase subunit; with sh2 complements E. coli glgC
4.05
 Cossegal, Magalie et al. 2008. Plant Physiol 146:1553-1570     Reference: November 9th, 2009
Gene Product: April 13th, 2006
Variation: September 1st, 2003
4 months agomrpa1 multidrug resistance protein associated1: ATP-binding cassette (ABC) transporter
2.09
 Swarbreck, D; Ripoll, P-J; Brown, DA; Edwards, K; Theodoulou, F. 2003. Gene. 315:153-164     Reference: November 6th, 2009
Variation: October 28th, 2009
4 months agona3 nana3: short plant with erect stiff leaves, like na1
4.05
 Neuffer, MG and England, DJ. 1995. MNL 69:43-46     Reference: September 1st, 2003
Variation: November 4th, 2009
4 months agogl4 glossy4: (was gl16) like gl1, but surface wax has reduced number of star-type particles
4.06
 Liu, S; Dietrich, C; Schnable, P. 2009. Genetics. 0:doi:10.1534/genetics.109.108936     Reference: November 1st, 2009
Variation: September 1st, 2003
4 months agomrpi2 MRP interacting2: nucleic acid binding protein
3.06
 Royo, J; Hueros, G. 2009. Planta. 230:807-818     Reference: October 26th, 2009
Variation: October 13th, 2009
4 months agomrp1 Myb related protein1: transforms aleurone cells into endosperm transfer cells and required to maintain transfer cell phenotype
8.05
 Royo, J; Hueros, G. 2009. Planta. 230:807-818     Reference: October 26th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
4 months agomeg1 maternally expressed gene1: Maternally transmitted alleles preferentially expressed in endosperm
7.01
 Gutierrez-Marcos, J, et al. 2004. Plant Cell. 16:1288-1301     Reference: October 15th, 2009
Variation: October 25th, 2009
4 months agomeg2 maternally expressed gene2: Maternally transmitted alleles preferentially expressed in endosperm
7.01
 Gutierrez-Marcos, J, et al. 2004. Plant Cell. 16:1288-1301     Reference: October 15th, 2009
Variation: October 25th, 2009
4 months agomeg3 maternally expressed gene3: Maternally transmitted alleles preferentially expressed in endosperm
7.01
 Gutierrez-Marcos, J, et al. 2004. Plant Cell. 16:1288-1301     Reference: October 15th, 2009
Variation: October 25th, 2009
4 months agomeg5 maternally expressed gene5: Maternally transmitted alleles preferentially expressed in endosperm
7.01
 Gutierrez-Marcos, J, et al. 2004. Plant Cell. 16:1288-1301     Reference: October 15th, 2009
Variation: October 25th, 2009
4 months agomeg6 maternally expressed gene6: Maternally transmitted alleles preferentially expressed in endosperm
7.01
 Gutierrez-Marcos, J, et al. 2004. Plant Cell. 16:1288-1301     Reference: October 15th, 2009
Variation: October 25th, 2009
4 months agomeg4 maternally expressed gene4: Maternally transmitted alleles preferentially expressed in endosperm
7.02
 Gutierrez-Marcos, J, et al. 2004. Plant Cell. 16:1288-1301     Reference: October 15th, 2009
Variation: October 25th, 2009
4 months agozmm7 Zea mays MADS7: identified by Northern analysis; expression female-specific, late onset
7.03
 Lid, SE; Meeley, R; Min, Z; Nichols, S; Olsen, OA. 2004. Plant Sci. 167:575-582     Reference: October 4th, 2004
Gene Product: October 17th, 2009
Variation: August 8th, 2008
4 months agozmm6 Zea mays MADS6: single copy; identified by cDNA hybridization in situ; early expression in male and female inflorescences, differentially in one member of a spikelet-primordium pair
1.06
 Lid, SE; Meeley, R; Min, Z; Nichols, S; Olsen, OA. 2004. Plant Sci. 167:575-582     Reference: October 4th, 2004
Gene Product: October 17th, 2009
Variation: August 8th, 2008
4 months agozmm8 Zea mays MADS8:
9.06
 Lid, SE; Meeley, R; Min, Z; Nichols, S; Olsen, OA. 2004. Plant Sci. 167:575-582     Reference: October 4th, 2004
Gene Product: October 17th, 2009
Variation: April 4th, 2007
4 months agozmm16 Zea mays MADS16: single copy; orthologous to rice GLO-like gene, OSMADS2; strongly expressed in developing male and female inflorescences but wealky expressed indeveloping kernels.
3.06
 Whipple, C, et al. 2004. Development. 131:6083-91     Reference: July 5th, 2005
Gene Product: October 17th, 2009
4 months agozag5 zea agamous5: MADS box, gene specific cDNA probe, expressed in carpels not stamens; SNP pzd00018
4.06 - 4.06
 Reinheimer, R; Kellogg, EA. 2009. Plant Cell. 0:epub ahead of print     Reference: October 15th, 2009
Gene Product: October 17th, 2009
Variation: October 7th, 2009
4 months agozag2 Zea AGAMOUS homolog2: amino acid sequence, deduced from cDNA sequence, has 49% identity to Arabidopsis, floral homeotic gene product; expression restricted to female inflorescence; near ts4
3.05 - 3.05
 Heuer, S et al. 2000. Sex Plant Reprod 13:21-27     Reference: April 3rd, 2008
Gene Product: October 17th, 2009
Variation: September 1st, 2003
5 months agobap2 basal layer antifungal protein2: cDNA, multiple copies; antifungal activity; basal endosperm cell specific
4.05
 Gomez, E; Hueros, G. 2009. Plant Cell. 21:2022-2035     Reference: October 15th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
5 months agoal9 aleurone9: aleurone specific cDNA, unknown function
8.08
 Gomez, E; Hueros, G. 2009. Plant Cell. 21:2022-2035     Reference: October 15th, 2009
Variation: October 14th, 2009
5 months agomn1 miniature seed1: small, somewhat defective kernel, fully viable; invertase reduced
2.04
 Gomez, E; Hueros, G. 2009. Plant Cell. 21:2022-2035     Reference: October 15th, 2009
Gene Product: September 1st, 2003
Variation: October 14th, 2009
5 months agokds1 CMP-KDO synthetase1: author match, gene identification in TIGR contig
8.03
 Gomez, E; Hueros, G. 2009. Plant Cell. 21:2022-2035     Reference: October 15th, 2009
Variation: April 18th, 2008
5 months agobetl10 basal endosperm transfer layer10: endosperm transfer cell specific protein, regulated by mrp1 myp related protein 1; probe IDP277
3.05
 Gomez, E; Hueros, G. 2009. Plant Cell. 21:2022-2035     Reference: October 15th, 2009
Variation: March 31st, 2005
5 months agobetl9 basal endosperm transfer layer9: endosperm transfer cell specific protein regulated by mrp1 myb related protein1; RFLP gpm92
3.05
 Gomez, E; Hueros, G. 2009. Plant Cell. 21:2022-2035     Reference: October 15th, 2009
Variation: October 8th, 2009
5 months agobsd2 bundle sheath defective2: bundle sheath chloroplasts disrupted; high chlorophyll fluorescence, seedling lethal
1.05
 Khavkin, EE. 1998. Genetic control of plant morphogenesis. Fiziol Rast 45:676-689     Reference: April 3rd, 2008
Gene Product: September 1st, 2003
Variation: October 14th, 2009
5 months agortcl1 RTCS-like1: homologous to rtcs1
9.07
 Taramino, G, et al. 2007. Plant J. 50:649-659     Reference: October 7th, 2009
Variation: October 9th, 2009
5 months agortcs1 rootless concerning crown and seminal roots1: root system reduced solely to a primary root yet plants can be carried to seed; cyclin cDNAs absent; naphthalene acetic acid induces adventitious roots
1.02
 Taramino, G, et al. 2007. Plant J. 50:649-659     Reference: October 7th, 2009
Gene Product: October 5th, 2009
Variation: May 7th, 2007
5 months agoam1 ameiotic1: male and female sterility - anaphase I equatorial; alleles am1-pra1(was pra1), am1-2 (was am2)
5.02
 Pawlowski, W, et al. 2009. Proc Natl Acad Sci, USA. 106:3603-3608     Reference: October 6th, 2009
Variation: October 6th, 2009
5 months agoslr1 short lateral root1:
 
 Hochholdinger, F et al. 2001. Plant Physiol 125:1529-1539     Reference: September 1st, 2003
Variation: October 5th, 2009
5 months agoslr2 short lateral root2:
 
 Hochholdinger, F et al. 2001. Plant Physiol 125:1529-1539     Reference: September 1st, 2003
Variation: October 5th, 2009
5 months agolrt1 lateral rootless1: few lateral root primordia form in primary and seminal roots, none proliferate; no response to naphthalene acetic acid
2.00 - 2.03
 Hochholdinger, F; Feix, G. 1998. Plant J. 16:247-255     Reference: October 5th, 2009
Variation: September 1st, 2003
5 months agowc1 white cap1: dominant Wc1 kernels have pale yellow endosperm if Y1 (pearly white with y1); whiteness is emphasized in soft-starch crowns
9.07
 Tan, BC et al. 2006. Maize Genetics Conference Abstracts 48:P252     Reference: February 24th, 2009
Gene Product: September 22nd, 2009
Variation: April 23rd, 2008
5 months agozfl2 Zea floricaula leafy2: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
2.02
 Buckler, E, et al. 2009. Science. 325:714-718     Reference: September 22nd, 2009
Variation: September 1st, 2003
5 months agoben2 bentazon resistance2: dominant Ben2 with Ben1 (Nsf1) confers resistance to bentazon herbicide
 
 Bradshaw, LD; Barrett, M; Poneleit, CG. 1994. Weed Sci 42:641-647     Reference: September 1st, 2003
Variation: September 19th, 2009
5 months agora1 ramosa1: ear and tassel many-branched; tassel branches taper to tip
7.02
 Wu, X; Skirpan, A; McSteen, P. 2009. Plant Physiol. 149:205-219     Reference: September 18th, 2009
Gene Product: April 11th, 2007
Variation: September 19th, 2009
5 months agocesa2 cellulose synthase2: cDNA
6.05
 Appenzeller, L, et al. 2004. 11:287-299     Reference: January 24th, 2007
Gene Product: June 28th, 2005
Variation: September 19th, 2009
5 months agora3 ramosa3: branched inflorescence; small, rounded ears branched at their tips
7.06
 Wu, X; Skirpan, A; McSteen, P. 2009. Plant Physiol. 149:205-219     Reference: September 18th, 2009
Gene Product: July 16th, 2007
Variation: September 1st, 2003
5 months agosxd1 sucrose export defective1: anthocyanin accumulates in a non-clonal pattern at tip and margins of leaves soon after emergence from whorl; reduced plant height
5.04
 Baker, RF; Braun, D. 2008. Plant Physiol. 146:1085-1097     Reference: September 18th, 2009
Gene Product: June 10th, 2005
Variation: September 1st, 2003
5 months agosos1 Suppressor of sessile spikelets1: dominant Sos1 suppresses sessile spikelets in ear primordia and in tassel; reduced tassel branching - contrasts to teosinte ears, where the pedicellate rather than the sessile spikelet is lacking (compare pd1 pd2, unpaired rows due to failure of pedicillate spikelets)
4.02
 Wu, X; Skirpan, A; McSteen, P. 2009. Plant Physiol. 149:205-219     Reference: September 18th, 2009
Variation: September 1st, 2003
5 months agotdy2 tie-dyed2: leaves yellow in patches simulating tie-dyed or zebra patterns
 
 Baker, RF; Braun, D. 2008. Plant Physiol. 146:1085-1097     Reference: September 18th, 2009
Variation: September 9th, 2009
5 months agoemp4 empty pericarp4: mitochondrion pentatricopeptide repeat (PPR) protein involved in specific expression of mitochondrial transcripts; impaired differentiation of basal endosperm transfer cells
1.10
 Gutierrez-Marcos, J; Dal Pra, M; Consonni, G. 2007. Plant Cell. 19:196-210     Reference: September 16th, 2009
Gene Product: September 16th, 2009
Variation: September 16th, 2009
6 months agomis12a minichromosome instabilty12a: encodes a core kinetochore protein required in meiosis I
10.07
 Li, X; Dawe, RK. 2009. Nat Cell Biol. 11:1103-1108   AT5G35520 (TAIR)
LOC_Os02g40680 (MSU/TIGR)
LOC_Os02g40680 (Gramene) 		Reference: September 1st, 2009
Gene Product: September 1st, 2009
Variation: September 1st, 2009
6 months agomis12b minichromosome instability12b: encodes a kinetochore protein required for meiosis I
2.00
 Li, X; Dawe, RK. 2009. Nat Cell Biol. 11:1103-1108   AT5G35520 (TAIR)
LOC_Os02g40680 (MSU/TIGR)
LOC_Os02g40680 (Gramene) 		Reference: September 1st, 2009
Gene Product: September 1st, 2009
Variation: September 1st, 2009
6 months agocf1 camouflage1: porphyrin synthesis; zebra bands, yellow progressing to necrotic, suppressed by continuous light
5.04
 Huang, M, et al. 2009. Molecular Plant. 2:773-789   AT5G08280 (TAIR)
LOC_Os02g0168800 (MSU/TIGR)
LOC_ Os02g0168800 (Gramene) 		Reference: August 28th, 2009
Gene Product: August 28th, 2009
Variation: September 23rd, 2005
6 months agolyce1 lycopene epsilon cyclase1: determines qualitative composition of endosperm carotenoids
8.05
 Bai, L; Kim, E; DellaPenna, D; Brutnell, TP. 2009. Plant J. 59:588-599     Reference: August 27th, 2009
Gene Product: September 9th, 2008
Variation: September 9th, 2008
6 months agops1 pink scutellum1: (aka vp7, lyc1, lycB) some alleles viviparous; endosperm and scutellum pink, seedling white with pink flush
5.04 - 5.04
 Bai, L; Kim, E; DellaPenna, D; Brutnell, TP. 2009. Plant J. 59:588-599     Reference: August 27th, 2009
Gene Product: June 10th, 2005
Variation: August 27th, 2009
6 months agodzr1 zein-protein regulator: regulates the delta zein structural genes dzs10 and dzs18
4.01 - 4.02
 Wu, Y; Goettel, W; Messing, J. 2009. Theor Appl Genet. 119:721-731     Reference: August 27th, 2009
Variation: September 1st, 2003
6 months agodzs10 delta zein structural10: [was Zps10/(22)]; high (22.5%) methionine 10kDa delta zein; RFLP (probe 10kZ-1)
9.03 - 9.03
 Wu, Y; Goettel, W; Messing, J. 2009. Theor Appl Genet. 119:721-731     Reference: August 27th, 2009
Gene Product: September 1st, 2003
Variation: August 27th, 2009
6 months agodzs18 delta zein structural18: high (26%) methionine 18 kDa delta zein, similar to dzs10
6.04
 Wu, Y; Goettel, W; Messing, J. 2009. Theor Appl Genet. 119:721-731     Reference: August 27th, 2009
Gene Product: September 1st, 2003
Variation: August 27th, 2009
6 months agofl2 floury2: endosperm opaque, soft; dosage effect; encodes an abnormal 24kDa alpha-zein as deduced from clone
4.03
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: August 24th, 2009
6 months agofl3 floury3: endosperm opaque, soft; dosage effect
8.03
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: August 24th, 2009
7 months agod3 dwarf plant3: like d1, plant short and compact; "d2" mutation(s) are allelic (d2 is lapsed)
9.03
 Bolduc, N; Hake, S. 2009. Plant Cell. 21:1647-58     Reference: August 13th, 2009
Gene Product: September 1st, 2003
Variation: May 19th, 2006
7 months agod9 dwarf plant9: dominant D9 plants semidwarf with broad, dark green leaves; andromonoecious, not responsive to gibberellins; possible duplicate locus of d8
5.01
 Bolduc, N; Hake, S. 2009. Plant Cell. 21:1647-58     Reference: August 13th, 2009
Gene Product: February 12th, 2007
Variation: August 30th, 2007
7 months agolg3 liguleless3: dominant Lg3 plants lack ligule; leaves upright, broad, often concave and pleated; homeobox similar to knox5 and knox11
3.04
 Bolduc, N; Hake, S. 2009. Plant Cell. 21:1647-58     Reference: August 13th, 2009
Gene Product: September 1st, 2003
Variation: May 19th, 2006
7 months agogn1 gnarley1: dominant Gn1 characterized by reduced internodal length, sinuously curving culm, lack of distinct boundary between blade and sheath, extra silks
2.10
 Bolduc, N; Hake, S. 2009. Plant Cell. 21:1647-58     Reference: August 13th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
7 months agoelm1 elongated mesocotyl1: elongated mesocotyl, pale green seedling leaves; pale green plant internodes; increased plant height; early flowering; phytochrome deficient.
8.06
 Sawers, RJH, et al. 2002. Plant Physiol. 130:155-163   AT3G09150 (TAIR) Reference: August 3rd, 2009
Gene Product: May 7th, 2006
Variation: May 14th, 2009
7 months agovdac2 voltage-dependent anion channel protein2:
6.07
 Geiger, TR et al. 1999. Plant Physiol 121:797     Reference: July 14th, 2009
Variation: July 24th, 2009
7 months agovdac1b voltage-dependent anion channel protein1b:
7.02
 Geiger, TR et al. 1999. Plant Physiol 121:797     Reference: July 14th, 2009
Variation: July 20th, 2009
8 months agovdac1a voltage-dependent anion channel protein1a:
2.06
 Geiger, TR et al. 1999. Plant Physiol 121:797     Reference: July 14th, 2009
Variation: July 14th, 2009
8 months agoadh1 alcohol dehydrogenase1: electrophoretic mobility; null alleles are known; dimeric; intra/interlocus hybrid bands occur); SSR umc1726
1.10
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: July 8th, 2009
Variation: September 1st, 2003
8 months agoadh2 alcohol dehydrogenase2: electrophoretic mobility, null alleles are known; dimeric, intra/interlocus hybrid bands occur; SSRs nc004, phi021
4.03
 Peters , JS; Frenkel, C. 2004. Plant Physiol Biochem. 42:841-6     Reference: May 31st, 2006
Gene Product: July 8th, 2009
Variation: September 1st, 2003
8 months agosdw2 semi-dwarf2: dominant Sdw2, short plant, 1/3-1/2 normal height, with normal green erect leaves; does not respond to gibberellins; no anthers in ear
3.05
 Neuffer, MG. 1992. MNL 66:39-40     Reference: September 1st, 2003
Variation: July 7th, 2009
8 months agosh2 shrunken2: inflated, transparent, sweet kernels collapse on drying, becoming angular and brittle; endosperm ADPG pyrophosphorylase subunit (compare bt2); application: "supersweet" sweet corn - kernels sugar-sweet for long period
3.09
 Lal, S et al. 1999. Plant Physiol 120:65-72     Reference: July 6th, 2009
Gene Product: April 13th, 2006
Variation: September 1st, 2003
8 months agophyB1 phytochromeB1: phyB1 mutants have elongated mesocotyl under red light. Double mutant with phyB2 is pale, narrow with elongated leaf blades, elongated internodes, less anthocyanin in sheath tissues, and earlier flowering time.
1.03
 Sheehan, M; Farmer, P; Brutnell, TP. 2004. Genetics. 167:1395-1405     Reference: July 4th, 2009
Gene Product: October 24th, 2007
Variation: September 1st, 2003
8 months agophyB2 phytochromeB2: phyB2 mutant is early flowering. Double mutant with phyB1 is pale, narrow with elongated leaf blades and elongated internodes, and contains less anthocyanin in sheath tissues.
9.05
 Sheehan, M; Farmer, P; Brutnell, TP. 2004. Genetics. 167:1395-1405     Reference: July 4th, 2009
Gene Product: October 24th, 2007
Variation: September 1st, 2003
8 months agophyA1 phytochromeA1: red/far red light signal receptor; major phytochrome A transcript in seedling leaf blade, sheath and mesocotyl under dark light conditions; is greatly reduced in white or red light. See also phyA2, phyB1, phyB2, phyC1, phyC2.
1.10
 Sheehan, M; Farmer, P; Brutnell, TP. 2004. Genetics. 167:1395-1405     Reference: July 4th, 2009
Gene Product: June 30th, 2009
Variation: September 1st, 2003
8 months agophyA2 phytochromeA2: red/far red light signal receptor; minor phytochrome A trancript in dark grown seedling leaf blade, sheath, mesocotyl. See also phyA1, phyB1, phyB2, phyC1, phyC2
5.01
 Sheehan, M; Farmer, P; Brutnell, TP. 2004. Genetics. 167:1395-1405     Reference: July 4th, 2009
Gene Product: June 30th, 2009
Variation: September 1st, 2003
8 months agophyC1 phytochromeC1: red/far red light signal receptor; major phytochrome C trancript in light and dark grown seedling leaf blade, sheath, mesocotyl. See also phyC2, phyA1, phyA2 phyB1, phyB2.
1.10
 Sheehan, M; Farmer, P; Brutnell, TP. 2004. Genetics. 167:1395-1405     Reference: July 4th, 2009
Gene Product: June 30th, 2009
Variation: June 30th, 2009
8 months agophyC2 phytochromeC2: red/far red light signal receptor; minor phytochrome C transcript in seedling leaf blade, sheath, mesocotyl. See also phyC1, phyA1, phyA2 phyB1, phyB2.
5.01
 Sheehan, M; Farmer, P; Brutnell, TP. 2004. Genetics. 167:1395-1405     Reference: July 4th, 2009
Gene Product: June 30th, 2009
Variation: June 30th, 2009
8 months agots1 tassel seed1: tassel pistillate and pendant; if removed, small ear with irregular kernel placement develops
2.04 - 2.05
 Acosta, I, et al. 2009. Science. 323:262-265     Reference: June 30th, 2009
Variation: March 19th, 2009
8 months agots2 tassel seed2: like ts1, but tassel branches variably pistillate and staminate; sequence homologous to short chain alcohol dehydrogenases; SSR phi001
1.03
 Acosta, I, et al. 2009. Science. 323:262-265     Reference: June 30th, 2009
Gene Product: September 1st, 2003
Variation: March 19th, 2009
8 months agocko1 cytokinin oxidase1: peptide, cDNA, and genomic sequence, transgenic expression; aka ckx1; SSR umc1057
3.02
 Schmulling, T et al. 2003. Structure and function of cytokinin oxidase/dehydrogenase genes of maize, rice, Arabidopsis and other species. J Plant Res 116:241-252     Reference: June 30th, 2009
Gene Product: June 1st, 2005
Variation: September 1st, 2003
8 months agolox7 lipoxygenase7:
10.04
 Acosta, I, et al. 2009. Science. 323:262-265     Reference: June 30th, 2009
Variation: April 23rd, 2009
8 months agoglo1 globby1: wide variation; floury variably collapsed and wrinkled kernel with a tiny nonviable embryo (Neuffer)
1.06
 Costa, LM; Gutierrez-Marcos, J; Brutnell, TP; Greenland, AJ; Dickinson, HG. 2003. Development. 130:5009-5017     Reference: June 30th, 2009
Variation: June 30th, 2009
8 months agogo1 glycolate oxidase1: seedling lethal necrotic unless supplied high CO2; photorespiration.
 
 Zelitch, I; Schultes, N; Peterson, RB; Brown, P; Brutnell, TP. 2009. Plant Physiol. 149:195-204     Reference: June 26th, 2009
Gene Product: June 26th, 2009
Variation: June 26th, 2009
8 months agocyc3 cyclin3: classIII; sense RNA functions in Xenopus oocytes; SSR umc1186
6.02
 Sauter, M et al. 1998. Sex Plant Reprod 11: 41-48     Reference: January 17th, 2007
Gene Product: June 26th, 2009
Variation: September 1st, 2003
8 months agocyc2 cyclin2: class II; sense RNA functions in Xenopus oocytes
3.04
 Sauter, M et al. 1998. Sex Plant Reprod 11: 41-48     Reference: January 17th, 2007
Gene Product: June 26th, 2009
Variation: September 1st, 2003
8 months agocyc1 cyclin1: classI; sense RNA functions in Xenopus oocytes
8.05
 Sauter, M et al. 1998. Sex Plant Reprod 11: 41-48     Reference: January 17th, 2007
Gene Product: June 26th, 2009
Variation: September 1st, 2003
8 months agocyc4b cyclin4: Class I; sense RNA functions in Xenopus oocytes
3.06
 Sauter, M et al. 1998. Sex Plant Reprod 11: 41-48     Reference: January 17th, 2007
Gene Product: June 26th, 2009
Variation: September 1st, 2003
8 months agoasc1 asceapen1: Recessive plants shortened, infertile with narrowed leaves; stomatal patterns altered
7.02
 Brooks III, Lionel; Strable, J; several other authors; Scanlon, MJ. 2009. PLoS Genet. 5:e1000476     Reference: June 26th, 2009
Gene Product: June 26th, 2009
Variation: March 31st, 2005
8 months agocyc5 cyclin5:
 
 Sun, YM et al. 1997. Gene 195:167-175     Reference: September 1st, 2003
Gene Product: June 26th, 2009
Variation: February 13th, 2008
8 months agopep1 phosphoenolpyruvate carboxylase1: cytosolic C4 isozyme; single copy, similar to C3-PEPCase genes; cDNA complements E. coli mutant; genomic and partial amino acid sequences compare; SSR phi065
9.03
 Kowles, RV et al. 2008. Maydica 53:69-78     Reference: June 25th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agopdk1 pyruvate, orthophosphate dikinase1: cDNA, genomic and peptide sequences; microsatellite mapped (SSRs phi025, phi078, phi081; nc012 ); cytosolic or plastidic, dependent on transcript processing
6.05
 Kowles, RV et al. 2008. Maydica 53:69-78     Reference: June 25th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agons2 narrow sheath2: duplicate factor with ns1
4.08
 Lunde, C; Hake, S. 2005. Maydica 50:451-458     Reference: June 24th, 2009
Variation: June 29th, 2005
8 months agoo15 opaque endosperm15: small opaque poorly viable kernel, abnormal seedling and plant (dwarf, ear in tassel); reduces 27kDa gamma zein mRNA and protein; germinates only with supplemented media; possibly identical to gzr1
7.06
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agobetl3 basal endosperm transfer layer3: cDNA sequence, specific to basal endosperm transfer layer
3.05
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agorf8 restorer of fertility8: dominant Rf8 substitutes for Rf1 to give parti al fertility restoration in presence of Rf2
2.05 - 2.10
 Skibbe, D; Schnable, P. 2005. Maydica 50:367-376     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agosem1 semaphore1: small kernels with reduced germination; plants brachytic with leaves that droop at maturity
9.00 - 9.03
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agohox3 homeobox3: cDNA ZmHox2a, meristem specific, duplicate of hox4, based on sequence and expression; sequence distinct from knotted related homeobox genes
3.07
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: May 17th, 2005
8 months agohox4 homeobox4: cDNA Zmhox2b, meristem specific, duplicate of hox3 based on sequence and expression
8.09
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
8 months agoole2 oleosin2: embryo lipid body protein; peptide, cDNA and genomic sequences
5.02
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoae1 amylose extender1: glassy, tarnished endosperm; high amylose content; application: highly linear starch is used for food films, fibers, and other industrial purposes
5.04
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: June 21st, 2006
8 months agoba1 barren stalk1: ear shoots and most tassel branches and spikelets absent
3.06
 Lunde, C; Hake, S. 2005. Maydica 50:451-458     Reference: June 24th, 2009
Gene Product: July 28th, 2005
Variation: September 1st, 2003
8 months agobt1 brittle endosperm1: mature kernel collapsed, angular, often translucent and brittle (alleles sh3, sh5)
5.04
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoc1 colored aleurone1: C1 colored; C1-I dominant colorless; c1 colorless, includes c1-p (pigment inducible by light at germination), c1-n (not inducible)
9.01
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agocat3 catalase3: electrophoretic mobility, null allele is known; mitochondrial; tetrameric, intralocus hybrid bands occur; SSRs phi006, phi019, phi076, umc1197
4.11
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agocp2 collapsed2: shrunken sugary endosperm; white seedling with green stripes (aka dek7, o12)
4.05
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agodap1 dappled aleurone1: dominant Dap1 kernels show patches of normal and abnormal aleurone cells; effect with colored aleurone is conspicuous
5.07 - 5.08
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agodek1 defective kernel1: germless; colorless (mosaic) aleurone; floury white endosperm; anthocyanins and carotenoids absent; cultured embryos not obtained (aka clf1, gay1)
1.03
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agodu1 dull endosperm1: glassy, tarnished endosperm; affects soluble starch synthase and branching enzyme IIa
10.03
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: August 23rd, 2005
Variation: September 1st, 2003
8 months agoga1 gametophyte factor1: (was ga9) Ga1 pollen grains are competitively superior to ga1 on Ga1 silks; Ga1-S (strong) super-gametophyte
4.02 - 4.03
 Kermicle, J et al. 2005. Maydica 51:219-226     Reference: June 24th, 2009
Variation: May 20th, 2006
8 months agoglb1 globulin1: (was prot1) electrophoretic mobility, null allele is known; embryo protein; SSRs phi011, 055, 094
1.09
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoglb2 globulin2: presence-absence
1.11
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agomc1 mucronate1: dominant Mc1 kernels have opaque endosperm
 
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agomsc1 mosaic1: dominant Msc1 aleurone mosaic for anthocyanin color; dosage effect
1.06 - 1.12
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agoo7 opaque endosperm7: like o1; high lysine content
10.07
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agop1 pericarp color1: dominant P1 regulates red pigment (phlobaphenes) in cob and pericarp (ex. P1-wr red cob; P1-rr red pericarp and cob) and in tassel glumes and husks; tissue-specific allele variations; SSR phi095
1.03
 Goettel, W; Messing, J. 2009. PLoS Genet. 0:e1000516. doi:10.1371/journal.pgen.1000516     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: April 18th, 2005
8 months agopro1 proline responding1: (allele o6) crumpled opaque kernel; green-striped lethal seedling; responds to proline in culture
8.04
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: May 19th, 2006
8 months agodhn1 dehydrin1: protein induced by abscisic acid; cDNA sequence agrees with amino acid sequence (aka dhn3, rab17, rny1)
6.05
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agorf1 restorer of fertility1: dominant Rf1 restores fertility to cms-T; complementary to Rf2
3.04
 Skibbe, D; Schnable, P. 2005. Maydica 50:367-376     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agorf2 restorer of fertility2: see rf1; cDNA prf2a complements E. coli mutant deficient in aldehyde dehydrogenase; mitochondrial
9.03
 Skibbe, D; Schnable, P. 2005. Maydica 50:367-376     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agorf3 restorer of fertility3: dominant Rf3 restores fertility to cms-S
2.09
 Skibbe, D; Schnable, P. 2005. Maydica 50:367-376     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agorf4 restorer of fertility4: dominant Rf4 restores fertility to cms-C; complementary with Rf5 and Rf6
8.01 - 8.01
 Skibbe, D; Schnable, P. 2005. Maydica 50:367-376     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agorf5 restorer of fertility5: dominant Rf5 restores fertility to cms-C; complementary with Rf4 and Rf6
 
 Skibbe, D; Schnable, P. 2005. Maydica 50:367-376     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agorf6 restorer of fertility6: dominant Rf6 restores fertility to cms-C; complementary with Rf4 and Rf5
 
 Skibbe, D; Schnable, P. 2005. Maydica 50:367-376     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agors1 rough sheath1: shoot meristem and developing stem specific; dominant Rs1 plants have extreme ligule disorganization (aka kn2)
7.00
 Lunde, C; Hake, S. 2005. Maydica 50:451-458     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agors2 rough sheath2: short, zigzag plants with warty, distorted sheaths and leaves
1.05
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agosh1 shrunken1: inflated endosperm collapses on drying, forming smoothly indented kernels; sucrose synthase-sh1 of endosperm (compare sus1 and sus2); homotetramer; SSRs phi028, 044, 033
9.01
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: October 25th, 2006
Variation: October 26th, 2006
8 months agosh4 shrunken4: collapsed, chalky endosperm
5.05
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agosu1 sugary1: endosperm wrinkled and translucent when dry; starch debranching enzyme I absent in developing endosperm, phytoglycogen but no debranching enzyme in germinating seeds; su1-am sugary-amylaceous; su1-st recessive starchy; application: the "sweet corn" gene - recessive kernels are creamy-sweet at milk stage
4.05
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agosu2 sugary2: endosperm glassy, translucent, sometimes wrinkled
6.04 - 6.05
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agotd1 thick tassel dwarf1: shortened plants, fasciated ears, increased spikelet density in tassel
5.03
 Lunde, C; Hake, S. 2005. Maydica 50:451-458     Reference: June 24th, 2009
Variation: August 7th, 2007
8 months agote1 terminal ear1: stalked ear appendages at tip; varying to infolded ears
3.05
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: May 31st, 2006
Variation: September 1st, 2003
8 months agotpi1 triose phosphate isomerase1: electrophoretic mobility; plastidial; dimeric; intra/interlocus hybrids occur with Tpi2
7.04 - 7.04
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
8 months agovp1 viviparous1: embryo fails to become dormant, viable if transplanted; some alleles dormant; chlorophyll and carotenoids unaffected; anthocyanins in aleurone suppressed (aka vp4); cDNA
3.05
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agow2 white seedling2: white seedling (yellow with l1); endosperm pitted and spotted (allele dek21); plastid DNA content decreased
10.07 - 10.07
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agowx1 waxy1: amylopectin (stained red by iodine) replaces amylose (blue staining) in endosperm and pollen; extensive allelic series; application: highly branched starch has gelling properties, used for food gels, adhesives, and other industrial purposes; SSRs phi022, 027, 061
9.03
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: June 4th, 2008
Variation: November 9th, 2004
8 months agolip15 low temperature-induced protein15: cDNA cross hybridizing to rice lip19, bZIP protein from rabbit reticulocytes or E. coli binds wheat histone H3 gene promoter; single band in Southerns
6.01
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: March 14th, 2007
8 months agozpu1 pullulanase-type starch debranching enzyme1: single copy, cDNA clone similar to rice sequence; SSR umc1003The zpu1 gene encodes a pullulanase-type starch debranching enzyme. Analysis of plants homozygous for the zpu1-204 mutation reveal the genes role in starch catabolism. zpu1-204 endosperm accumulate maltooligosaccharides not found in wild type plants. zpu1-204 are also deficient for linear maltooligosaccharides.
2.05
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoocl1 outer cell layer1: homeobox protein expressed in outer layers of embryo axis and in developing endosperm; maps near glossy6 on chromosome 3 (Ingram et al 1999)
3.04
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: April 12th, 2005
8 months agoesr1 embryo surrounding region1: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoesr2 embryo surrounding region2: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agorpd3 RPD3 histone deacetylase homolog: cDNA complements yeast rpd3, multiple copy, SSR umc1173.
4.09
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: June 24th, 2005
Variation: June 8th, 2005
8 months agoesr3 embryo surrounding region3: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoald1 aldolase1: cytosolic aldolase; cDNA and genomic clones; Southern blots give single or double band; promoter functional in transient expression assay
8.06
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agocr4 crinkly4: crinkly seedling leaves; plants short with rough, sometimes knot-bearing, extremely crinkly leaves and club tassel; aleurone mosaic
10.02
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agodsc1 discolored kernel1: crumpled, discolored, germless lethal
4.05
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agohox1 homeobox1: cDNA Zmhox1a, meristem specific, nuclear, protein product binds to feedback control element of sh1 promoter; SSR's umc1309, umc1343
8.05
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agohox2 homeobox2: cDNA ZmHox1b, meristem specific, duplicate of hox1 based on sequence and expression
6.07
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoemp2 empty pericarp 2: germless, unfilled kernel
2.06
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agohsbp1 herbicide safener binding protein1: coleoptile; cDNA sequences, SSR umc1535; antisera; transgenic expression
2.05
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agorrb2 related to retinoblastoma2: alternatively spliced cDNAs, ubiquitous, see rrb1
4.08
 Sabelli, PA et al. 2005. Maydica 50:485-496     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agotm20 transmembrane protein20: reduced kernelgenomic and cDNA sequences near Ac insertion into lachrima, aka dek34
6.00 - 6.01
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agosbe1 starch branching enzyme1: maize kernel cDNA sequence is similar to starch branching enzyme I of bacteria, encodes a putative 64-amino acid plastid transit peptide (aka sbe1)
5.03
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agopk4 protein kinase4: cDNA sequence
3.07
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoocl2 outer cell layer2:
10.06
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoocl3 outer cell layer3:
7.03
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoocl5a outer cell layer5a:
4.04 - 4.05
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoknox6 knotted related homeobox6: similar to knox2 in sequence and expression; cDNA and genomic clones; gene specific probe
5.04
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoknox2 knotted related homeobox2: sequence similar to knox6 and knox7; gene specific probe; cDNA and genomic clones
9.03
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
8 months agosbe3 starch branching enzyme3:
8.06
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agorbap1 WD-repeat protein RBAP1: cDNA belongs to a small gene family; has a high nucleotide sequence homology to a sequence, GenBank Acc# AF384037, that encodes nucleosome /chromatin assembly factor C; has functional homology to yeast MSI1 gene, and encodes a protein that binds acetylated H3 and H4 histones from maize endosperm.
3.07
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agobif2 barren inflorescence2: recessive few-branched tassel, normally no pollen shed; variable expression on ear with 0-2 spikelets produced at each floral node
1.05
 Lunde, C; Hake, S. 2005. Maydica 50:451-458     Reference: June 24th, 2009
Variation: June 29th, 2005
8 months agotsh1 tassel sheath1: leaves develop at base of tassel branches and spikelet pairs
 
 Lunde, C; Hake, S. 2005. Maydica 50:451-458     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agons1 narrow sheath1: plant brachytic, duplicate factor with ns2; leaf sheath and blade taper, blade widens toward tip; husks narrowed, ears exposed
2.05
 Lunde, C; Hake, S. 2005. Maydica 50:451-458     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agocdc2 cell division control protein2 homolog: cDNA sequence homologous to cdc2/cdc28 subfamily of serine/threonine protein kinases, complements yeast cdc28
 
 Sabelli, PA et al. 2005. Maydica 50:485-496     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoplt1 phospholipid transfer protein homolog1: amino acid sequence, deduced from coleoptile cDNA, homologous to phospholipid transfer proteins
3.06
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoole3 oleosin3: embryo lipid body protein, peptide, cDNA and genomic sequences; SSR phi113
5.01 - 5.04
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoole1 oleosin1: major protein from lipid bodies, cDNA and genomic clones; SSR umc1185
2.03
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agode*-B30 defective endosperm B30: dominant De*-B30 has opaque, high lysine endosperm
7.01 - 7.02
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: September 1st, 2003
8 months agofie1 fertilization independent endosperm1:
4.05
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agofie2 fertilization independent endosperm2:
10.03
 Vernoud, V et al. 2005. Maydica 50:469-484     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agomlg3 lea protein group3: cDNA similar to wheat Ec; SSR phi070
6.07
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agosam1 S-adenosylmethionine decarboxylase1: single copy leaf cDNA csu217; aka csu6b
10.04 - 10.05
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agorrb1 related to retinoblastoma1: nuclear, low copy, ubiquitous expression; phosphorylation dependent role in cell division
2.09
 Sabelli, PA et al. 2005. Maydica 50:485-496     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agocdpk1 calcium dependent protein kinase1: endosperm cDNA 5C04G11, similar to plant calcium dependent protein kinases
6.01
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: February 12th, 2008
8 months agosal1 supernumerary aleurone1: Mutant allele contains up to seven layers of aleurone cells
9.03
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: April 3rd, 2007
8 months agoane1 androgenic embryo1: multigene family; sequence suggests extracellular location; expressed in embryo surrounding region of developing endosperm and in basal endosperm transfer layer
4.09
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: May 11th, 2004
8 months agoane3 androgenic embryo3: single copy; specifically expressed in embryo surrounding region during early stages of endosperm development
10.03
 Pirona, R et al. 2005. Maydica 50:515-530     Reference: June 24th, 2009
Variation: May 11th, 2004
8 months agofae1 fatty acid elongase1 :
 
 Lunde, C; Hake, S. 2005. Maydica 50:451-458     Reference: June 24th, 2009
Variation: February 12th, 2008
8 months agoglx1 glyoxylase1:
10.03
 Marocco, A et al. 2005. Maydica 50:571-580     Reference: June 24th, 2009
Variation: March 5th, 2008
8 months agocg1 corngrass1: semidominant Cg1 plants have narrow leaves, extreme tillering
3.02
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: September 1st, 2003

Recommended by George Chuck:
September 25th, 2007
8 months agoepc1 early phase change1: (was gef1) recessive eliminates or reduces first leaves, root and shoot apices aberrant
8.03
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: June 29th, 2005
8 months agomrl1 midribless1: loss of midrib in juvenile leaves, occasionally in adult leaves
 
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agobx1 benzoxazinless1: cyclic hydroxamates (blue color in etiolated c oleoptile or crushed root tip with FeCl3), which inhibit Ostrinia nubilalis and Helminthosporium turcicum, present in Bx1 roots, absent in bx1 unless fed indole
4.00
 Eisenreich, W; Gierl, A. 2005. Maydica 50:507-514     Reference: June 23rd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agocms-S cytoplasmic male sterility: female-transmitted male sterility, S type; restored by Rf3
 
 Gabay-Laughnan, S; Newton, K. 2005. Maydica 50:349-360     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agocms-T cytoplasmic male sterility: female-transmitted male sterility, Texas type; restored by Rf1 Rf2
 
 Gabay-Laughnan, S; Newton, K. 2005. Maydica 50:349-360     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agogl15 glossy15: glossy leaf surface expressed after 3rd leaf (aka gl4)
9.03
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agohsf1 hairy sheath frayed1: dominant Hsf1 plants have pubescent sheaths and leaf margins; liguled enations at leaf margins
5.06 - 5.07
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agolg2 liguleless2: like lg1, less extreme
3.06
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Gene Product: September 1st, 2003
Variation: May 19th, 2006
8 months agorgd1 ragged seedling1: (aka lbl1) seedling leaves narrow, thread-like, have difficulty in emerging; low temperature enhances expression
6.01 - 6.01
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Gene Product: May 20th, 2008
Variation: September 1st, 2003
8 months agort1 rootless1: secondary roots few or absent
3.04
 Hochholdinger, F et al. 2005. Maydica 50:437-442     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agotp2 teopod2: like tp1
10.04 - 10.05
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agowab1 Wavy auricles in blades: dominant confers auricle tissue in blade portion of leaf
2.06 - 2.07
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agorld1 rolled leaf1: in dominant Rld1 plants, leaves are tightly rolled and tend to be entangled; ligular flaps on abaxial surface of leaf; resembles Ce1
9.07 - 9.08
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agobx7 benzoxazinone synthesis7: encodes O-methyl transferase converting TRIBOA-glucoside to DIMBOA-glucoside
4.03
 Eisenreich, W; Gierl, A. 2005. Maydica 50:507-514     Reference: June 23rd, 2009
Gene Product: July 24th, 2008
8 months agobx3 benzoxazinone synthesis3: cDNA, gene specific probe, seedling specific clone; SSR umc1017
4.01
 Eisenreich, W; Gierl, A. 2005. Maydica 50:507-514     Reference: June 23rd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agobx2 benzoxazinone synthesis2: seedling specific, cDNA CYP71C4 (mpki8), gene specific probe; SSR umc1164, umc1682
4.01
 Eisenreich, W; Gierl, A. 2005. Maydica 50:507-514     Reference: June 23rd, 2009
Gene Product: September 1st, 2003
Variation: June 2nd, 2006
8 months agorth1 roothair defective1: roothairs do not elongate in rth1 homozygotes; plants are dwarfed and appear nutrient deficient; genomic sequence
1.09
 Hochholdinger, F et al. 2005. Maydica 50:437-442     Reference: June 23rd, 2009
Variation: April 2nd, 2007
8 months agorth2 roothair defective2: root hairs elongate 1/5-1/4 of normal; plants are vigorous and show little nutritional deficiency
5.04 - 5.09
 Hochholdinger, F et al. 2005. Maydica 50:437-442     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agorth3 roothair defective3: like rth1, but "stocking cap" roothair initials under electron microscope
1.03
 Hochholdinger, F et al. 2005. Maydica 50:437-442     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agotp3 teopod3: semi-dominant that increases tillering and decreases number of lateral tassel branches; originally identified by J. Beckett, may be allele of Cg1
3.02
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: September 1st, 2003
8 months agobrk1 brick1:
5.08
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Gene Product: September 1st, 2003
Variation: May 18th, 2009
8 months agobx6 benzoxazinone synthesis6: encodes 2-oxoglutarate-dependent dioxygenase, which catalyzes 7-hydroxylation of DIBOA to TRIBOA, substrate methylated to DIMBOA
4.01
 Eisenreich, W; Gierl, A. 2005. Maydica 50:507-514     Reference: June 23rd, 2009
Gene Product: July 25th, 2008
Variation: July 24th, 2008
8 months agoglk1 G2-like1:
9.00
 Langdale, J. 2005. Maydica 50:459-458     Reference: June 23rd, 2009
Variation: May 9th, 2009
9 months agoc2 colorless2: colorless aleurone, reduced plant and cob color; C2-Idf dominant inhibitor; duplicate factor with whp1 for pollen color and for anthocyanins
4.08
 Niesbach-Klosgen, U et al. 1987. J Mol Evol 26:213-225     Reference: June 12th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agowhp1 white pollen1: duplicate factor with c2 for pollen color and for anthocyanins
2.08
 Niesbach-Kloesgen, U et al. 1987. J Mol Evol 26:213-225     Reference: June 12th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agoles*-D101 lesion*-D101: dominant leaf lesions; medium timing, medium size, medium color
 
 Johal, GS; Hulbert, SH; Briggs, SP. 1995. Disease lesion mimics of maize: A model for cell death in plants. Bioessays 17:685-692     Reference: September 1st, 2003
Variation: June 4th, 2009
9 months agoles*-MA102 lesion*-MA102: dominant Les* plants have early, large, orange lesions
 
 Johal, GS; Hulbert, SH; Briggs, SP. 1995. Disease lesion mimics of maize: A model for cell death in plants. Bioessays 17:685-692     Reference: September 1st, 2003
Variation: June 4th, 2009
9 months agoles*-EC91 lesion*-EC91: dominant Les* plants have early, small, necrotic lesions
 
 Johal, GS; Hulbert, SH; Briggs, SP. 1995. Disease lesion mimics of maize: A model for cell death in plants. Bioessays 17:685-692     Reference: September 1st, 2003
Variation: June 4th, 2009
9 months agoles*-1369 lesion*-1369: dominant Les* plants have medium early, large, chlorotic lesions
 
 Johal, GS; Hulbert, SH; Briggs, SP. 1995. Disease lesion mimics of maize: A model for cell death in plants. Bioessays 17:685-692     Reference: September 1st, 2003
Variation: June 4th, 2009
9 months agoles*-28Q lesion*-28Q: dominant Les* plants have late, small, chlorotic lesions
 
 Johal, GS; Hulbert, SH; Briggs, SP. 1995. Disease lesion mimics of maize: A model for cell death in plants. Bioessays 17:685-692     Reference: September 1st, 2003
Variation: June 4th, 2009
9 months agoles*-U957 lesion candidateU957: Dominant Les*-U957 lesion mimic with small (clonal) necrotic lesions to large necrotic sectors; from Mu screening
 
 Lee, EA et al. 1993. MNL 67:33-34     Reference: September 1st, 2003
Variation: June 4th, 2009
9 months agoaldh5 aldehyde dehydrogenase5: cDNA similar to rf2 (prf2d-exprA7); complements E. coli
3.09
 Skibbe, D, et al. 2002. Plant Mol Biol. 48:751-764     Reference: June 28th, 2005
Gene Product: June 28th, 2005
Variation: May 30th, 2009
9 months agogl1 glossy1: cuticle wax altered; leaf surface bright, water adheres
7.02
 Kvakan, P. 1924. Cornell Univ Agric Exp Stn Memoir 83: 1-22     Reference: September 22nd, 2007
Gene Product: September 1st, 2003
Variation: May 29th, 2009
9 months agona1 nana plant1: short, erect dwarf; no response to gibberellins
3.06 - 3.08
 Hutchison, CB. 1922. Cornell Univ Agric Exp Stn Memoir 60:1421-1473     Reference: September 29th, 2004
Variation: May 29th, 2009
9 months agowlu2 white luteus2: like wlu1
7.02 - 7.06
 Neuffer, MG and England, DJ. 1995. MNL 69:43-46     Reference: September 1st, 2003
Variation: May 29th, 2009
9 months agodek33 defective kernel33: opaque, floury, dented, wrinkled kernel with floury endosperm; occasionally viviparous
5.04 - 5.05
 Neuffer, MG et al. 1978. MNL 52:84-88     Reference: September 1st, 2003
Variation: May 29th, 2009
9 months agorgh2 rough endosperm2: (was rgh*-N1013A) small floury rough surface nonviable kernel
2.01 - 2.02
 Neuffer, MG. 1995. Data on kernel mutations from laboratory records     Reference: September 1st, 2003
Variation: May 29th, 2009
9 months agoopr5 12-oxo-phytodienoic acid reductase5: Predicted to have cytoplasmic localization (Zhang et al. 2005)
2.04
 Zhang, J, et al. 2005. Plant Mol Biol. 59:323-343     Reference: May 22nd, 2009
Variation: June 11th, 2008

Recommended by Ed Coe:
May 1st, 2007
9 months agotga1 teosinte glume architecture1: glumes indurated, erect, long, boat-shaped; factor transferred from teosinte
4.05
 Wang, H, et al. 2005. Nature. 436:714-719     Reference: May 22nd, 2009
Variation: September 1st, 2003
9 months agotip1 tonoplast intrinsic protein1: tip1 cDNA is 1097 bp long, including the 93 bp leader sequence. Its derived amino acid sequence has 76% identity with the tonoplast aquaporin from Arabidopsis.
10.04
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip1a plasma membrane intrinsic protein1:
2.03
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: June 6th, 2005
9 months agopip1b plasma membrane intrinsic protein1:
5.06
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip2a plasma membrane intrinsic protein2:
2.03
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip1c plasma membrane intrinsic protein1: Differs in nucleotide sequence from pip1d but encodes the same protein.
4.06
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip1e plasma membrane intrinsic protein1:
4.06
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip1f plasma membrane intrinsic protein1:
9.01
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip2b plasma membrane intrinsic protein2:
2.06
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip2c plasma membrane intrinsic protein2:
4.06
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip2d plasma membrane intrinsic protein2: member of the aquaporin family
5.05
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agopip2f plasma membrane intrinsic protein2:
7.02
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agotip2 tonoplast intrinsic protein2:
8.06
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agotip2a tonoplast intrinsic protein2:
4.06
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agotip2b tonoplast intrinsic protein2:
5.06
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agotip2c tonoplast intrinsic protein2:
 
 Zhu, C et al. 2005. J Exp Bot 56:2971-2981     Reference: May 22nd, 2009
Gene Product: September 1st, 2003
9 months agoopr1 12-oxo-phytodienoic acid reductase1: Cytoplasmic
9.01
 Zhang, J, et al. 2005. Plant Mol Biol. 59:323-343     Reference: May 22nd, 2009
Variation: July 21st, 2008
9 months agoopr2 12-oxo-phytodienoic acid reductase2: Cytoplasmic
8.05
 Zhang, J, et al. 2005. Plant Mol Biol. 59:323-343     Reference: May 22nd, 2009
Variation: July 21st, 2008
9 months agoopr3 12-oxo-phytodienoic acid reductase3:
 
 Zhang, J, et al. 2005. Plant Mol Biol. 59:323-343     Reference: May 22nd, 2009
Variation: July 21st, 2008
9 months agoopr4 12-oxo-phytodienoic acid reductase4: Cytoplasmic
8.05
 Zhang, J, et al. 2005. Plant Mol Biol. 59:323-343     Reference: May 22nd, 2009
Variation: July 21st, 2008
9 months agoopr6 12-oxo-phytodienoic acid reductase6: Cytoplasmic
3.04
 Zhang, J, et al. 2005. Plant Mol Biol. 59:323-343     Reference: May 22nd, 2009
Variation: July 21st, 2008
9 months agoopr7 12-oxo-phytodienoic acid reductase7: peroxisomal
 
 Zhang, J, et al. 2005. Plant Mol Biol. 59:323-343     Reference: May 22nd, 2009
Variation: July 21st, 2008
9 months agoopr8 12-oxo-phytodienoic acid reductase8: peroxisomal
4.05
 Zhang, J, et al. 2005. Plant Mol Biol. 59:323-343     Reference: May 22nd, 2009
Variation: July 21st, 2008
9 months agoacc2 acetyl-CoA carboxylase2: graminicide (e.g., sethoxydim, haloxyfop) resistance; encodes acetyl-CoA carboxylase
2.04
 Song, X; Song, TM; Dai, JR; Rocheford, TR; Li, J. 2004. Maydica. 49:41-48     Reference: May 21st, 2009
Gene Product: September 1st, 2003
Variation: May 17th, 2006
9 months agoacc1 acetyl-coenzyme A carboxylase1: tissue-culture selected resistance to cyclohexanedione (e.g., sethoxydim) and aryloxy phenoxypropionate (e.g., haloxyfop) herbicides; encodes acetyl-CoA carboxylase
10.04
 Song, X; Song, TM; Dai, JR; Rocheford, TR; Li, J. 2004. Maydica. 49:41-48     Reference: May 21st, 2009
Gene Product: September 1st, 2003
Variation: May 17th, 2006
9 months agofad8 fatty acid desaturase8: leaf cDNA and genomic clones with sequence similarity to Arabidopsis FAD7; unlike maize fad7, not expressed at cold; SSR umc1021
1.03
 Song, X; Song, TM; Dai, JR; Rocheford, TR; Li, J. 2004. Maydica. 49:41-48     Reference: May 21st, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
9 months agorps4 ribosomal protein S4: vegetative meristem cDNA 7C02E04 similar to cytoplasm ribosomal protein
5.00
 Jang, CS et al. 2004. Maydica 49:137-144     Reference: May 21st, 2009
Gene Product: September 1st, 2003
Variation: May 21st, 2009
9 months agohm2 Helminthosporium carbonum susceptibility2: dominant Hm2 plants resistant to Cochliobolus carbonum; like Hm1, masked by Hm1
9.03 - 9.04
 Tiffin, P et al. 2004. Genetics 168:425-434     Reference: May 20th, 2009
Variation: September 1st, 2003
9 months agowip1 wound induced protein1: wounding-induced transcript, cDNA clone (601bp) sequenced; homologous to Bowman-Birk proteinase inhibitors
8.01
 Tiffin, P and Gaut, BS. 2001. Mol Biol Evol 18:2092-2101     Reference: May 20th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
10 months agokan1 KANADI1:
1.05
 Candela, H; Johnston, R; Gerhold, A; Foster, T; Hake, S. 2008. Plant Cell. 20:2073-2087     Reference: May 15th, 2009
Variation: September 8th, 2008
10 months agokan3 kanadi3:
4.05
 Candela, H; Johnston, R; Gerhold, A; Foster, T; Hake, S. 2008. Plant Cell. 20:2073-2087     Reference: May 15th, 2009
Variation: September 8th, 2008
10 months agotan1 tangled1: (was py1) leaves short, pointed, fine white streaks; displays abnormally oriented cell divisions and altered growth and development throughout the plant
6.05
 Smith, LG et al. 2001. J Cell Biol 152:231-236     Reference: May 15th, 2009
Variation: September 1st, 2003
10 months agoaldh3 aldehyde dehydrogenase3: cDNA sequence similar to rf2; complements E. coli JA111 with defective ALDH
3.09
 Skibbe, D, et al. 2002. Plant Mol Biol. 48:751-764     Reference: June 28th, 2005
Gene Product: June 28th, 2005
Variation: May 15th, 2009
10 months agomha4 proton-exporting ATPase4:
10.07
 Santi, S et al. 1995. Plant Physiol 109:1277-1283     Reference: May 9th, 2009
Variation: May 13th, 2009
10 months agoaldh2 aldehyde dehydrogenase2: cDNA similar to rf2; transgene in E. coli shows aldehyde dehydrogenase activity, but unable to complement the ALDH deficient E. coli mutant; mitochondrial location inferred from presence of leader sequence
4.06
 Skibbe, D, et al. 2002. Plant Mol Biol. 48:751-764     Reference: June 28th, 2005
Gene Product: September 1st, 2003
Variation: May 13th, 2009
10 months agomha2 plasma-membrane H+ATPase2: cDNA sequence similar to plant plasma-membrane [H+]-ATPase and distinct from mha1
2.02
 Santi, S et al. 2003. J Exp Bot 54:1851-1864     Reference: May 9th, 2009
Gene Product: September 1st, 2003
Variation: May 12th, 2009
10 months agopsk1 phytosulfokine peptide precursor1: cDNA from inbred LC, very similar to rice PSK4; similarity to maize psk3 less but closer than to psk2 or psk4
7.00
 Lorbiecke, R et al. 2005. J Exp Bot 56: 1805-1819     Reference: January 17th, 2007
Variation: May 9th, 2009
10 months agoczog1 cis-zeatin O-glucosyltransferase1: gene intronless, genomic and cDNA sequences identical (Martin et al., 2001 PNAS 98:5922); expression high in roots and kernels (compare czog2).
2.03
 Mok, MC et al. 2005. pp.1057-1066     Reference: May 9th, 2009
Gene Product: September 1st, 2003
Variation: September 1st, 2003
10 months agop2 pericarp color2: nearly identical to p1, active in anther and silk but does not determine pericarp color; SSR's umc2096, umc2097.
1.03
 Zhang, F; Peterson, TA. 2005. Plant Cell. 17:903-914     Reference: May 9th, 2009
Variation: July 7th, 2005
10 months agogla3 beta-glucanase3:
5.01
 Suen, D et al. 2003. J Biol Chem 278:43672-43681     Reference: March 4th, 2009
Variation: May 9th, 2009
10 months agoasn2 asparagine synthetase2:
3.09
 Todd, J et al. 2008. Plant Sci 175:799-808     Reference: March 16th, 2009
Variation: May 9th, 2009
10 months agoasn3 asparagine synthetase3:
1.03
 Todd, J et al. 2008. Plant Sci 175:799-808     Reference: March 16th, 2009
Variation: May 9th, 2009
10 months agoasn4 asparagine synthetase4:
9.06
 Todd, J et al. 2008. Plant Sci 175:799-808     Reference: March 16th, 2009
Variation: May 9th, 2009
10 months agopdi2 protein disulfide isomerase2:
2.08
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: May 9th, 2009
10 months agopdi3 protein disulfide isomerase3:
4.11
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: May 9th, 2009
10 months agopdi4 protein disulfide isomerase4:
5.03
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: May 9th, 2009
10 months agopdi5 protein disulfide isomerase5:
9.02
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: May 9th, 2009
10 months agopdi6 protein disulfide isomerase6:
3.04
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: May 9th, 2009
10 months agomfsd1 major facilitator superfamily defense1: Defense-inducible protein related to integral membrane permeases and bacterial antiporters
 
 Simmons, CR; Fridlender, M; Navarro, P; Yalpani, N. 2003. Plant Mol Biol. 52:433-446     Reference: May 8th, 2009
Variation: May 9th, 2009
10 months agomfsd2 major facilitator superfamily defense2: Protein related to integral membrane permeases and bacterial antiporters
 
 Simmons, CR; Fridlender, M; Navarro, P; Yalpani, N. 2003. Plant Mol Biol. 52:433-446     Reference: May 8th, 2009
Variation: May 9th, 2009
10 months agonthr3 anther-specific protein 3:
7.03
 Lauga, B et al. 2000. Plant Sci 157:65-75     Reference: September 1st, 2003
Variation: May 9th, 2009
10 months agooy1 oil yellow1: seedling oily greenish-yellow; viable; fails to convert protoporphyrin IX to Mg-protoporphyrin; oy1-t tinged green; oy1-1039, oy1-1040 lethal; Oy1-700 dominant yellow-green; gene product confirmed by transgenic expression and genetic mapping.
10.02
 Sawers, RJH, et al. 2006. Plant Mol Biol. 60:95-106     Reference: May 8th, 2009
Gene Product: June 8th, 2007
Variation: September 1st, 2003
10 months agopun1 plastids undifferentiated1:
 
 Roth, R et al. 2001. Planta 213:647-658     Reference: May 8th, 2009
Variation: September 1st, 2003
10 months agopls1 phospholipid synthesis1: endosperm cDNA complements E. coli temperature sensitive mutant in plsC
4.01
 Brown, AP; Coleman, J; Tommey, AM; Watson, MD; Slabas, AR. 1994. Plant Mol Biol 26:211-223     Reference: September 1st, 2003
Gene Product: April 27th, 2009
Variation: September 1st, 2003

Recommended by Ed Coe:
January 8th, 2008
10 months agorcp1 root cap protein1:
6.01
 Ponce, G et al. 2000. Maize Genetics Conference Abstracts 42:P42     Reference: September 1st, 2003
Gene Product: April 27th, 2009
Variation: July 29th, 2004
10 months agoba4 barren stalk4: mutant lacks ear shoot and show disease sensitivity to anthracnose
 
 Peterson, PA in Kanellis, AK et al. 1999.     Reference: April 25th, 2009
Variation: July 7th, 2004
11 months agolgn1 liguleless narrow1:
 
 Gerhold, A; Candela-Anton, H; Neuffer, G; Hake, S. 2005. MNL. 79:2     Reference: July 28th, 2006
Variation: April 3rd, 2009
11 months agospi1 sparse inflorescence1:
3.08
 Gallavotti, A, et al. 2008. Proc Natl Acad Sci, USA. 105:15196-152-1     Reference: April 2nd, 2009
Gene Product: April 1st, 2009
Variation: April 2nd, 2009

Recommended by Lisa Harper:
October 7th, 2008
11 months agoglb3 globulin3: 18-kD alpha globulin
6.06
 Woo, Y et al. 2001. Plant Cell 13:2297-2317     Reference: September 1st, 2003
Variation: March 30th, 2009
11 months agoczog2 cis-zeatin O-glucosyltransferase2: enzymatic activity like that of czog1 but high in roots and low in kernels; 97.8% identity at amino acid level
8.07
 Veach, YK; Martin, RC; Mok, DWS; Malbeck, J; Vankova, R; Mok, MC. 2003. Plant Physiol. 131:1374-1380     Reference: October 16th, 2003
Gene Product: September 1st, 2003
Variation: March 25th, 2009

Recommended by Marty Sachs:
March 7th, 2007
11 months agoaco5 acontase5:
2.07
     Gene Product: September 1st, 2003
Variation: March 25th, 2009
11 months agoyab10 yabby homolog10:
1.07
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009

Recommended by Marty Sachs:
March 7th, 2007
11 months agoyab14 yabby14:
10.05
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009

Recommended by Marty Sachs:
March 7th, 2007
11 months agoyab9 yabby9:
5.03
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009

Recommended by Marty Sachs:
March 7th, 2007
11 months agopdi7 protein disulfide isomerase7:
6.05
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: March 23rd, 2009
11 months agopdi8 protein disulfide isomerase8:
7.02
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: March 23rd, 2009
11 months agopdi9 protein disulfide isomerase9:
1.03
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: March 23rd, 2009
11 months agopdi10 protein disulfide isomerase10:
2.04
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: March 23rd, 2009
11 months agopdi11 protein disulfide isomerase11:
10.04
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: March 23rd, 2009
11 months agopdi12 protein disulfide isomerase12:
2.07
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: March 23rd, 2009
11 months agoqsox1 thiol oxidoreductase1:
6.07
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agoaprl1 adenosine 5'-phosphosulfate reductase-like1:
7.03
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agoaprl2 adenosine 5'-phosphosulfate reductase-like2:
2.07
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agoaprl3 adenosine 5'-phosphosulfate reductase-like3:
4.08
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agoaprl4 adenosine 5'-phosphosulfate reductase-like4:
5.07
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: September 1st, 2003
Variation: March 23rd, 2009
11 months agoaprl5 adenosine 5'-phosphosulfate reductase-like5:
1.07
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agoaprl7 adenosine 5'-phosphosulfate reductase-like7:
3.05
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agoaprl8 adenosine 5'-phosphosulfate reductase-like8:
1.11
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agoaprl9 adenosine 5'-phosphosulfate reductase-like9:
5.01
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agoyab15 yabby15:
5.05
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Variation: March 23rd, 2009
11 months agodvd1 developmental disaster1:
5.03
 Phillips, K; Skirpan, A; Kaplinsky, N; McSteen, P. 2009. Am J Bot. 96:420-430     Reference: March 20th, 2009
Variation: March 20th, 2009
12 months agowcr1 wandering carpel1: embryos on any face of kernel, sometimes 2 seeded kernels, and extra carpels
 
 Irish, EE et al. 2003. The wandering carpel mutation of Zea mays (Gramineae) causes misorientation and loss of zygomorphy in flowers and two-seeded kernels. Am J Bot 90:551-560     Reference: September 1st, 2003
Variation: March 19th, 2009
12 months agoasn1 asparagine synthetase1: cDNA sequence 70% identical to asparagine synthetase from Pisum sativum
1.03
 Todd, J et al. 2008. Plant Sci 175:799-808     Reference: March 16th, 2009
Gene Product: September 1st, 2003
Variation: March 10th, 2009
12 months agoasrp2 arginine/serine-rich splicing factor2: RNA binding nuclear splicing protein
2.05
 Gupta, S et al. 2005. Biochim Biophys Acta 1728:105-114     Reference: March 16th, 2009
Variation: February 7th, 2009
12 months agoasrp1 arginine/serine-rich splicing factor1: RNA binding nuclear splicing protein
10.04
 Gupta, S et al. 2005. Biochim Biophys Acta 1728:105-114     Reference: March 16th, 2009
Variation: February 7th, 2009

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