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Overview of the Genome Assemblies for Maize
Assembly Name Identifier Line Accession Quality Toronto
Agreement
Release Status
B73 RefGen_v1 Zm00001a B73   PRJNA10769 Representative no 2009 Completed
B73 RefGen_v2 Zm00001b B73   PRJNA10769 Representative no 2011 Completed
B73 RefGen_v3 Zm00001c B73   PRJNA72137 Representative no 2013 Completed
ZeaMays_PT_EDMX2233_1.0 Zm00002a Palomero Toluqueno   PRJNA51041 Scaffolds no 2011 Complete
Zm-B104-DRAFT-ISU_USDA-0.1 Zm00007a B104   Draft YES fall 2017 Draft pseudomolecules. Full reference genome release expected fall 2017.
Zm-B73-REFERENCE-GRAMENE-4.0 Zm00001d B73   Representative no 2017 Assembly and annotation released in spring, 2017
Zm-CML247-DRAFT-PANZEA-1.0 Zm00006a CML247   Draft no 2016 Assembly and annotation released
Zm-CML247-REFERENCE-PANZEA-1.1 Zm00006b CML247   PRJNA396542 Reference no 2017 Assembly released, annotation in progress
Zm-EP1-REFERENCE-TUM-1.0 Zm00010a EP1   PRJNA360920 Reference YES Feb, 2017 Assembly completed and annotation in progress
Zm-F7-REFERENCE-TUM-1.0 Zm00011a F7   PRJNA360923 Reference YES Feb, 2017 Assembly completed and annotation in progress
Zm-Ki11-REFERENCE-GRAMENE-1.0 Zm00012a Ki11   Reference n/a late 2017 In progress
Zm-Mo17-REFERENCE-CAU-1.0 Zm00014a Mo17   PRJNA358298 Reference n/a late 2017 Assembly completed. Annotation in progress.
Zm-Mo17-REFERENCE-NRGENE-1.0 Zm00005a Mo17   Reference n/a late 2016 Replaced by Zm-Mo17-REFERENCE-CAU-1.0
Zm-Mo17-REFERENCE-YAN-1.0 Zm00009a Mo17   PRJNA299869 unknown no 'Nov, 2017 Assembly and annotation completed
Zm-NC350-REFERENCE-GRAMENE-1.0 Zm00013a NC350   Reference n/a early 2018 In progress
Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0 Zm00008a PH207   PRJNA389728 Reference no Nov, 2016 Assembly and annotation completed
Zm-W22-REFERENCE-NRGENE-2.0 Zm00004b W22   PRJNA311133 Reference YES 2017 Assembly and annotation completed
Zx-PI566673-REFERENCE-YAN-1.0 Zx00001a PI 566673   PRJNA299874 Reference no 'Nov, 2017 Assembly and annotation completed
Click here to learn about maize genome and gene model nomenclature rules.
Project name Version 1 of the maize B73 reference genome
Under Toronto Agreement? no
Project detail page B73 RefGen_v1
Importance B73 is a key founder line to stiff stalk germplasm and has been extensively used for breeding and genetics for decades. Due to its importance to researchers and breeders, it became the first maize genome to be sequenced.
Assembly name B73 RefGen_v1
Also known as AGPv1, B73 RefGen_v1
Assembly identifier Zm00001a
Project accession PRJNA10769
Quality Representative
Cultivar B73
Current annotation not yet provided
Sequencing group
Contact Doreen Ware (ware@cshl.edu)
Sequencing platform(s) Sanger
Status Completed
Changes to previous version
Release date (may be an estimate) 2009
Publication The B73 Maize Genome: Complexity, Diversity, and Dynamics. Patrick S. Schnable, Doreen Ware, Robert S. Fulton, Joshua C. Stein, Fusheng Wei, Shiran Pasternak, Chengzhi Liang, Jianwei Zhang, Lucinda Fulton, Tina A. Graves, Patrick Minx, Amy Denise Reily, Laura Courtney, Scott S. Kruchowski, Chad Tomlinson, Cindy Strong, Kim Delehaunty, Catrina Fronick, Bill Courtney, Susan M. Rock, Eddie Belter, Feiyu Du, Kyung Kim, Rachel M. Abbott, Marc Cotton, Andy Levy, Pamela Marchetto, Kerri Ochoa, Stephanie M. Jackson, Barbara Gillam, Weizu Chen, Le Yan, Jamey Higginbotham, Marco Cardenas, Jason Waligorski, Elizabeth Applebaum, Lindsey Phelps, Jason Falcone, Krishna Kanchi, Thynn Thane, Adam Scimone, Nay Thane, Jessica Henke, Tom Wang, Jessica Ruppert, Neha Shah, Kelsi Rotter, Jennifer Hodges, Elizabeth Ingenthron, Matt Cordes, Sara Kohlberg, Jennifer Sgro, Brandon Delgado, Kelly Mead, Asif Chinwalla, Shawn Leonard, Kevin Crouse, Kristi Collura, Dave Kudrna, Jennifer Currie, Ruifeng He, Angelina Angelova, Shanmugam Rajasekar, Teri Mueller, Rene Lomeli, Gabriel Scara, Ara Ko, Krista Delaney, Marina Wissotski, Georgina Lopez, David Campos, Michele Braidotti, Elizabeth Ashley, Wolfgang Golser, HyeRan Kim, Seunghee Lee, Jinke Lin, Zeljko Dujmic, Woojin Kim, Jayson Talag, Andrea Zuccolo, Chuanzhu Fan, Aswathy Sebastian, Melissa Kramer, Lori Spiegel, Lidia Nascimento, Theresa Zutavern, Beth Miller, Claude Ambroise, Stephanie Muller, Will Spooner, Apurva Narechania, Liya Ren, Sharon Wei, Sunita Kumari, Ben Faga, Michael J. Levy, Linda McMahan, Peter Van Buren, Matthew W. Vaughn, Kai Ying, Cheng-Ting Yeh, Scott J. Emrich, Yi Jia, Ananth Kalyanaraman, An-Ping Hsia, W. Brad Barbazuk, Regina S. Baucom, Thomas P. Brutnell, Nicholas C. Carpita, Cristian Chaparro, Jer-Ming Chia, Jean-Marc Deragon, James C. Estill, Yan Fu, Jeffrey A. Jeddeloh, Yujun Han, Hyeran Lee, Pinghua Li, Damon R. Lisch, Sanzhen Liu, Zhijie Liu, Dawn Holligan Nagel, Maureen C. McCann, Phillip SanMiguel, Alan M. Myers, Dan Nettleton, John Nguyen, Bryan W. Penning, Lalit Ponnala, Kevin L. Schneider, David C. Schwartz, Anupma Sharma, Carol Soderlund, Nathan M. Springer, Qi Sun, Hao Wang, Michael Waterman, Richard Westerman, Thomas K. Wolfgruber, Lixing Yang, Yeisoo Yu, Lifang Zhang, Shiguo Zhou, Qihui Zhu, Jeffrey L. Bennetzen, R. Kelly Dawe, Jiming Jiang, Ning Jiang, Gernot G. Presting, Susan R. Wessler, Srinivas Aluru, Robert A. Martienssen, Sandra W. Clifton, W. Richard McCombie, Rod A. Wing, Richard K. Wilson
Project name Version 2 of the maize B73 reference genome
Under Toronto Agreement? no
Project detail page B73 RefGen_v2
Importance B73 is a key founder line to stiff stalk germplasm and has been extensively used for breeding and genetics for decades. Due to its importance to researchers and breeders, it became the first maize genome to be sequenced.
Assembly name B73 RefGen_v2
Also known as AGPv2, B73 RefGen_v2
Assembly identifier Zm00001b
Project accession PRJNA10769
Quality Representative
Cultivar B73
Current annotation not yet provided
Sequencing group Doreen Ware
Contact Doreen Ware (ware@cshl.edu)
Sequencing platform(s) Sanger
Status Completed
Changes to previous version Improvements to order and orientation of within-BAC contigs using the minimum tiling path (MPT).
Release date (may be an estimate) 2011
Publication
Project name Version 3 of the maize B73 reference genome
Under Toronto Agreement? no
Project detail page B73 RefGen_v3
Importance B73 is a key founder line to stiff stalk germplasm and has been extensively used for breeding and genetics for decades. Due to its importance to researchers and breeders, it became the first maize genome to be sequenced.
Assembly name B73 RefGen_v3
Also known as AGPv3, B73 RefGen_v3
Assembly identifier Zm00001c
Project accession PRJNA72137
Quality Representative
Cultivar B73
Current annotation not yet provided
Sequencing group Doreen Ware
Contact Doreen Ware (ware@cshl.edu)
Sequencing platform(s) Sanger and 454
Status Completed
Changes to previous version 500 fosmid clones were sequenced and finished and an 8x shotgun sequence was generated via 454 sequencing. BAC assemblies were improved for BACs in the tiling path, and gaps in v2 were filled with resultant sequence contigs.
Release date (may be an estimate) 2013
Publication A panoply of genomics techniques to update the Zea mays B73 reference sequence and annotations. Andrew J. Olson, Joshua C. Stein, Shiran Pasternak, Jeffrey C. Glaubitz, Edward S. Buckler, Fusheng Wei, Jianwei Zhang, Rod A. Wing, Robert S. Fulton, Richard K. Wilson, Ethalinda K.S. Cannon, Carson M. Andorf, Carolyn J. Lawrence
Project name Zea mays strain: Palomero Toluqueno EDMX-2233 Genome sequencing and assembly
Under Toronto Agreement? no
Project detail page unavailable
Importance Palomero toluqueno is a Mexican landrace (heterogenous), and was chosen for having the smallest genome of the Mexican Land Races.
Assembly name ZeaMays_PT_EDMX2233_1.0
Also known as Palomero
Assembly identifier Zm00002a
Project accession PRJNA51041
Quality Scaffolds
Cultivar Palomero Toluqueno
Current annotation not yet provided
Sequencing group Laboratorio Nacional de Genómica para la Biodiversidad (LANGEBIO) CINVESTAV Irapuato
Contact ()
Sequencing platform(s) unknown
Status Complete
Changes to previous version
Release date (may be an estimate) 2011
Publication The Palomero genome suggests metal effects on domestication.. Vielle-Calzada JP1, Martínez de la Vega O, Hernández-Guzmán G, Ibarra-Laclette E, Alvarez-Mejía C, Vega-Arreguín JC, Jiménez-Moraila B, Fernández-Cortés A, Corona-Armenta G, Herrera-Estrella L, Herrera-Estrella A.
Project name Sequencing, Assembly and Annotation of B104 , A Maize Transformation Resource.
Under Toronto Agreement? YES
Project detail page Zm-B104-DRAFT-ISU_USDA-0.1
Importance The B104 inbreed was derived from the same BSSS breeding population as B73. The genomes are very similar (93% similar as defined by Romay et al. Genome Biology 2013), but B104 is readily transformed whereas B73 is not. Having the genome of a transformable maize line is therefore very valuable to the maize community. This B104 maize line is used in the Iowa State Transformation Facility.
Assembly name Zm-B104-DRAFT-ISU_USDA-0.1
Also known as B104
Assembly identifier Zm00007a
Project accession
Quality Draft
Cultivar B104
Current annotation not yet provided
Sequencing group Carolyn Dill, Carson Andorf, Nick Lauter, Kan Wang- ISU
Contact Carson Andorf (Carson.Andorf@ARS.USDA.GOV)
Sequencing platform(s) Illumina paired end sequencing
Status Draft pseudomolecules. Full reference genome release expected fall 2017.
Changes to previous version
Release date (may be an estimate) fall 2017
Publication
Comments In the interest of the maize research community, the Iowa State Transformation Facility and Lawrence-Dill Plant Informatics and Computation Lab in collaboration with MaizeGDB has released a beta-version of the B104 maize genome and structural annotations prior to scientific publication in accordance with guidelines set forth by the Toronto Agreement for prepublication data sharing (Nature. 2009 461:168). The above groups reserve the first right to publish on the available B104 data including but not limited to whole-genome comparisons, genes, structural annotations, functional annotations, and genome-wide association studies. The group also reserves the right to the first opportunity to improve this sequence and its annotations for a full official genome release (version 1; anticipated release December 2017). Under the Toronto agreement, researchers can use the B104 sequence and annotation to study individual or small sets of genes and localized regions of the genome. Any redistribution of these data should include the full text of the data use policy.
Project name B73 Genome Assembly
Under Toronto Agreement? no
Project detail page Zm-B73-REFERENCE-GRAMENE-4.0
Importance B73 is a key founder line to stiff stalk germplasm and has been extensively used for breeding and genetics for decades. Due to its importance to researchers and breeders, it became the first maize genome to be sequenced.
Assembly name Zm-B73-REFERENCE-GRAMENE-4.0
Also known as AGPv4, B73 RefGen_v4
Assembly identifier Zm00001d
Project accession
Quality Representative
Cultivar B73
Current annotation not yet provided
Sequencing group Doreen Ware
Contact Doreen Ware (ware@cshl.edu)
Sequencing platform(s) PacBio SMRT
Status Assembly and annotation released in spring, 2017
Changes to previous version
Release date (may be an estimate) 2017
Publication Improved maize reference genome with single-molecule technologies. Yinping Jiao; Paul Peluso; Jinghua Shi; Tiffany Liang; Michelle C. Stitzer; Bo Wang; Michael Campbell; Joshua C. Stein; Xuehong Wei; Chen-Shan Chin; Katherine Guill; Michael Regulski; Sunita Kumari; Andrew Olson; Jonathan Gent; Kevin L. Schneider; Thomas K. Wolfgruber; Michael R. May; Nathan M. Springer; Eric Antoniou; Richard McCombie; Gernot G. Presting; Michael McMullen; Jeffrey Ross-Ibarra; Kelly Dawe; Alex Hastie; David R. Rank; Doreen Ware
Project name De novo genome assembly of tropical maize inbred line CML247
Under Toronto Agreement? no
Project detail page Zm-CML247-DRAFT-PANZEA-1.0
Importance A topical line that is valuable line for maize breeding because of its high disease resistance, and is a maize NAM line parent. CML247 is also one of the CIMMYT maize inbred lines (CMLs).
Assembly name Zm-CML247-DRAFT-PANZEA-1.0
Also known as CML247
Assembly identifier Zm00006a
Project accession
Quality Draft
Cultivar CML247
Current annotation not yet provided
Sequencing group Ed Buckler
Contact Ed Buckler (esb33@cornell.edu)
Sequencing platform(s) Illumina HiSeq2500, Illumina MiSeq
Status Assembly and annotation released
Changes to previous version
Release date (may be an estimate) 2016
Publication High-resolution genetic mapping of maize pan-genome sequence anchors. Lu F, Romay MC, Glaubitz JC, Bradbury PJ, Elshire RJ, Wang T, Li Y, Li Y, Semagn K, Zhang X, Hernandez AG, Mikel MA, Soifer I, Barad O, Buckler ES
Project name De novo genome assembly of tropical maize inbred line CML247 by NRGene
Under Toronto Agreement? no
Project detail page Zm-CML247-REFERENCE-PANZEA-1.1
Importance A valuable line for maize breeding because of its high disease resistance, and part of the maize pan-genome consortium. CML247 is a tropical line that is part of the CIMMYT maize inbred lines (CMLs).
Assembly name Zm-CML247-REFERENCE-PANZEA-1.1
Also known as CML247
Assembly identifier Zm00006b
Project accession PRJNA396542
Quality Reference
Cultivar CML247
Current annotation not yet provided
Sequencing group Ed Buckler
Contact Ed Buckler (esb33@cornell.edu)
Sequencing platform(s) Illumina HiSeq2500, Illumina MiSeq
Status Assembly released, annotation in progress
Changes to previous version
Release date (may be an estimate) 2017
Publication High-resolution genetic mapping of maize pan-genome sequence anchors. Lu F, Romay MC, Glaubitz JC, Bradbury PJ, Elshire RJ, Wang T, Li Y, Li Y, Semagn K, Zhang X, Hernandez AG, Mikel MA, Soifer I, Barad O, Buckler ES
Project name EP1 Genome Assembly - Technical University of Munich
Under Toronto Agreement? YES
Project detail page Zm-EP1-REFERENCE-TUM-1.0
Importance EP1 is an important Flint breeding line in Europe and trace back to the Spanish landrace Lizargarate. Many US lines derive from Dent germplasm. The EP1 reference sequence complements the maize pan-genome with European Flint diversity.
Assembly name Zm-EP1-REFERENCE-TUM-1.0
Also known as EP1
Assembly identifier Zm00010a
Project accession PRJNA360920
Quality Reference
Cultivar EP1
Current annotation not yet provided
Sequencing group Chris-Carolin Schön (Plant Breeding, Technical University of Munich)
Contact Eva Bauer (e.bauer@tum.de)
Sequencing platform(s) Illumina technologies
Status Assembly completed and annotation in progress
Changes to previous version
Release date (may be an estimate) Feb, 2017
Publication European Flint reference sequences complement the maize pan-genome. Unterseer, Sandra*; Seidel, Michael A.*; Bauer, Eva; Haberer, Georg; Hochholdinger, Frank; Opitz, Nina, Marcon, Caroline; Baruch, Kobi; Manuel Spannagl; Mayer, Klaus F.X.; Schön, Chris-Carolin * These authors contributed equally.
Project name F7 Genome Assembly - Technical University of Munich
Under Toronto Agreement? YES
Project detail page Zm-F7-REFERENCE-TUM-1.0
Importance F7 is an important Flint breeding line in Europe, and trace back to the French landrace Lacaune. Many US lines derive from Dent germplasm. The F7 reference sequence complements the maize pan-genome with European Flint diversity.
Assembly name Zm-F7-REFERENCE-TUM-1.0
Also known as F7
Assembly identifier Zm00011a
Project accession PRJNA360923
Quality Reference
Cultivar F7
Current annotation not yet provided
Sequencing group Chris-Carolin Schön (Plant Breeding, Technical University of Munich)
Contact Eva Bauer (e.bauer@tum.de)
Sequencing platform(s) Illumina technologies
Status Assembly completed and annotation in progress
Changes to previous version
Release date (may be an estimate) Feb, 2017
Publication European Flint reference sequences complement the maize pan-genome. Unterseer, Sandra*; Seidel, Michael A.*; Bauer, Eva; Haberer, Georg; Hochholdinger, Frank; Opitz, Nina, Marcon, Caroline; Baruch, Kobi; Manuel Spannagl; Mayer, Klaus F.X.; Schön, Chris-Carolin * These authors contributed equally.
Project name Ki11 Genome Assembly
Under Toronto Agreement? n/a
Project detail page unavailable
Importance Ki11 is a drought-tolerant inbred line developed in 1982 at Kasetsart University, Thailand.
Assembly name Zm-Ki11-REFERENCE-GRAMENE-1.0
Also known as Ki11
Assembly identifier Zm00012a
Project accession
Quality Reference
Cultivar Ki11
Current annotation not yet provided
Sequencing group Doreen Ware
Contact Doreen Ware (ware@cshl.edu)
Sequencing platform(s) unknown
Status In progress
Changes to previous version
Release date (may be an estimate) late 2017
Publication
Project name Mo17 Genome Assembly from CAU
Under Toronto Agreement? n/a
Project detail page Zm-Mo17-REFERENCE-CAU-1.0
Importance Mo17 is a maize lineage used in breeding and genetics research. Many varients of Mo17 exist, and this line likely differs from the Mo17 that is available from the Plant Introduction Station in Ames, IA
Assembly name Zm-Mo17-REFERENCE-CAU-1.0
Also known as Mo17
Assembly identifier Zm00014a
Project accession PRJNA358298
Quality Reference
Cultivar Mo17
Current annotation not yet provided
Sequencing group Lai lab
Contact Jinsheng Lai (jlai@cau.edu.cn)
Sequencing platform(s) PacBio+Illumina+Bionano
Status Assembly completed. Annotation in progress.
Changes to previous version
Release date (may be an estimate) late 2017
Publication Exceptional intra-specific gene order and gene structural variations between maize B73 and Mo17 genome. Silong Sun, Yingsi Zhou, Jian Chen, Junpeng Shi, Haiming Zhao, Hainan Zhao, Weibin Song, Mei Zhang, Yang Cui, Xiaomei Dong, Han Liu, Xuxu Ma, Yinping Jiao, Xuehong Wei, Joshua C. Stein, Jeff C. Glaubitz, Fei Lu, Guoliang Yu, Chengzhi Liang, Kevin Fengler, Bailin Li, Antoni Rafalski, Patrick S. Schnable, Doreen H. Ware, Edward S. Buckler, Jinsheng Lai
Project name Mo17 Genome Assembly - Lai Lab
Under Toronto Agreement? n/a
Project detail page Zm-Mo17-REFERENCE-NRGENE-1.0
Importance Mo17 is a maize lineage used in breeding and genetics research. Many varients of Mo17 exist, and this line likely differs from the Mo17 that is available from the Plant Introduction Station in Ames, IA.
Assembly name Zm-Mo17-REFERENCE-NRGENE-1.0
Also known as Mo17
Assembly identifier Zm00005a
Project accession
Quality Reference
Cultivar Mo17
Current annotation not yet provided
Sequencing group Lai lab
Contact Jinsheng Lai (jlai@cau.edu.cn)
Sequencing platform(s) Illumina sequencing of 50x coverage reads with assembly by NRGene
Status Replaced by Zm-Mo17-REFERENCE-CAU-1.0
Changes to previous version
Release date (may be an estimate) late 2016
Publication
Project name Mo17 Genome Assembly - Yan Lab
Under Toronto Agreement? no
Project detail page Zm-Mo17-REFERENCE-YAN-1.0
Importance Mo17 is a maize lineage used in breeding and genetics research. Many varients of Mo17 exist, and this line likely differs from the Mo17 that is available from the Plant Introduction Station in Ames, IA
Assembly name Zm-Mo17-REFERENCE-YAN-1.0
Also known as Mo17
Assembly identifier Zm00009a
Project accession PRJNA299869
Quality unknown
Cultivar Mo17
Current annotation not yet provided
Sequencing group Jianbing Yan
Contact Jianbing Yan (yjianbing@mail.hzau.edu.cn)
Sequencing platform(s) Illumina, Pacific Biosciences
Status Assembly and annotation completed
Changes to previous version
Release date (may be an estimate) 'Nov, 2017
Publication Contributions of Zea mays subspecies mexicana haplotypes to modern maize.. Ning Yang, Xi-Wen Xu, Rui-Ru Wang, Wen-Lei Peng, Lichun Cai, Jia-Ming Song, Wenqiang Li, Xin Luo, Luyao Niu, Yuebin Wang, Min Jin, Lu Chen, Jingyun Luo, Min Deng, Long Wang, Qingchun Pan, Feng Liu, David Jackson, Xiaohong Yang, Ling-Ling Chen, Jianbing Yan
Project name NC350 Genome Assembly
Under Toronto Agreement? n/a
Project detail page unavailable
Importance NC350 derived from an experimental line sharing the same pedigree of NC296, crossed with an experimental line from the hybrid H101 from El Salvador. Developed in 1998 North Carolina, United States by North Carolina Agricultural Research Service. It is a NAM parent.
Assembly name Zm-NC350-REFERENCE-GRAMENE-1.0
Also known as NC350
Assembly identifier Zm00013a
Project accession
Quality Reference
Cultivar NC350
Current annotation not yet provided
Sequencing group Doreen Ware
Contact Doreen Ware (ware@cshl.edu)
Sequencing platform(s) unknown
Status In progress
Changes to previous version
Release date (may be an estimate) early 2018
Publication
Project name PH207 Genome Assembly
Under Toronto Agreement? no
Project detail page Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0
Importance PH207 is a key founder line to Iodent germplasm and represents an alternative to B73 (stiff stalk germplasm). For more information, se the poster.
Assembly name Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0
Also known as PH207
Assembly identifier Zm00008a
Project accession PRJNA389728
Quality Reference
Cultivar PH207
Current annotation not yet provided
Sequencing group Candy Hirsch
Contact Candy Hirsch (cnhirsch@umn.edu)
Sequencing platform(s) Whole-genome shotgun sequencing using paired-end, mate-pair, and TruSeq synthetic long-reads
Status Assembly and annotation completed
Changes to previous version
Release date (may be an estimate) Nov, 2016
Publication De novo assembly of elite inbred line PH207 provides insights into genomic and transcriptomic diversity in maize (Zea mays L.). Candice N. Hirscha, Cory D. Hirsch, Alex B. Brohammer, Megan J. Bowman, Ilya Soifer, Omer Barad, Doron Shem-Tov, Kobi Baruch, Fei Lu, Alvaro G. Hernandez, Christopher J. Fields, Chris L. Wright, Klaus Koehler, Nathan M. Springer, Edward Buckler, C. Robin Buell, Natalia de Leon, Shawn M. Kaeppler, Kevin L. Childs, Mark A. Mikel
Comments De novo genomic assembly of the Iodent PH207 through extensive (~220x) Illumina short read sequencing of multiple insert size libraries coupled with light (~1.3x) coverage from Illumina Moleculo Long Read Technology
Project name W22 (C1:R-r:std - PI 674445) Sequence and Assembly
Under Toronto Agreement? YES
Project detail page Zm-W22-REFERENCE-NRGENE-2.0
Importance W22 has been heavily used in genetic and crop breeding experiments for decades. Its sequence is especially valuable to maize researchers using sequence-indexed Mutator insertion lines.
Assembly name Zm-W22-REFERENCE-NRGENE-2.0
Also known as W22
Assembly identifier Zm00004b
Project accession PRJNA311133
Quality Reference
Cultivar W22
Current annotation not yet provided
Sequencing group Tom Brutnell, Erik Vollbrecht, Charles Du, Hugo Dooner, Don McCarty
Contact Tom Brutnell (tbrutnell@danforthcenter.org)
Sequencing platform(s) NRGene de novo assembly
Status Assembly and annotation completed
Changes to previous version
Release date (may be an estimate) 2017
Publication The maize W22 genome: a foundation for gene discovery and functional genomics. Tom Brutnell, Omer Barad, Kobi Baruch, Gil Ben-Zvi, Ed Buckler, Ethalinda Cannon, Paul Chomet, Hugo Dooner, Chunguang Du, Georg Jander, Karen Koch, Don McCarty, Ilya Soifer, Doron Shem-Tov, Erik Vollbrect, Doreen Ware, Maggie Woodhouse
Project name Zea mays ssp. mexicana Genome Assembly - PI 566673
Under Toronto Agreement? no
Project detail page Zx-PI566673-REFERENCE-YAN-1.0
Importance
Assembly name Zx-PI566673-REFERENCE-YAN-1.0
Also known as Zea mexicana
Assembly identifier Zx00001a
Project accession PRJNA299874
Quality Reference
Cultivar PI 566673
Current annotation not yet provided
Sequencing group Yan lab
Contact Jianbing Yan (yjianbing@mail.hzau.edu.cn)
Sequencing platform(s) Illumina, Pacific Biosciences
Status Assembly and annotation completed
Changes to previous version
Release date (may be an estimate) 'Nov, 2017
Publication Contributions of Zea mays subspecies mexicana haplotypes to modern maize.. Ning Yang, Xi-Wen Xu, Rui-Ru Wang, Wen-Lei Peng, Lichun Cai, Jia-Ming Song, Wenqiang Li, Xin Luo, Luyao Niu, Yuebin Wang, Min Jin, Lu Chen, Jingyun Luo, Min Deng, Long Wang, Qingchun Pan, Feng Liu, David Jackson, Xiaohong Yang, Ling-Ling Chen, Jianbing Yan