Newly Characterized Genes

CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

MaizeGDB prefers not to assign formal gene names to gene models based purely on orthology. Known difficulties include inclusivity (there are over 10,000 functionally characterized Arabidopsis genes)* and some likelihood of errors in inferred functions. Unlike gene models, gene names are generally conserved unless differently named genes are found to be allelic. Of particular note, naming priveleges are customarily held by researchers who first confirm function.

We encourage researchers to use the annotation tool on the MaizeGDB gene model pages to add their insights about putative function, especially when not currently part of the Phytozome or Gramene pipelines.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The updates are made around 4:00am CST.


         Recommended Genes


Most recent data | Six months | One year | All time

New or updated genes since six months ago. The cutoff date is March 23rd, 2017.

Last UpdateGeneFull Name : DescriptionChromosome
or Bin
Gene
Model
Recent ReferenceOrthologsUpdate information
yesterdayagpll1 ADP glucose pyrophosphorylase large subunit leaf1AGPL4:
1.10
GRMZM2G391936
Huang, B-Q; Hennen-Bierwagen, TA; Myers, AM. 2014. Plant Physiol. 164:596-611     Reference: October 20th, 2014
Gene Product: January 3rd, 2014
Variation: September 22nd, 2017
Gene Model: September 22nd, 2017
yesterdaytps21 terpene synthase21: has a role in fungal tolerance; involved in the producation of beta-selinene and beta-costic acid
 
GRMZM2G011151
Ding, YZ et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00879     Reference: September 22nd, 2017
Gene Product: May 28th, 2012
Gene Model: September 22nd, 2017
2 days agosh1 shrunken1: inflated endosperm collapses on drying, forming smoothly indented kernels; sucrose synthase-sh1 of endosperm (compare sus1 and sus2); homotetramer; SSRs phi028, 044, 033
9.01
   Guan, HY et al. 2017. Plant Growth Regulation pp.DOI: 10.1007/s10725-017-0309-9     Reference: September 21st, 2017
Gene Product: October 25th, 2006
Variation: September 21st, 2017
3 days agoa1 anthocyaninless1: colorless aleurone, green or brown plant; brown pericarp with P1-rr
3.09
   Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: April 11th, 2013
Variation: August 25th, 2010
3 days agoa2 anthocyaninless2: like a1, but red pericarp with P1-rr
5.03
   Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: June 7th, 2012
Variation: September 1st, 2003
3 days agobz1 bronze1: modifies purple aleurone and plant color to pale or reddish brown; anthers yellow-fluorescent; allele bz1-m4 = sh1-bz1-m4; SSR phi017NCBI: UDPG-flavonoid 3-oxy glucosyl transferase
9.02
   Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: September 1st, 2003
Variation: June 25th, 2015
3 days agobz2 bronze2: like bz1; anthers not fluorescent; an1-6923 mutation includes deletion for Bz2; encodes a glutathione S-transferase conjugating anthocyanins into the vacuole
1.08
   Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: September 1st, 2003
Variation: March 31st, 2008
3 days agoc1 colored aleurone1: C1 colored; C1-I dominant colorless; c1 colorless, includes c1-p (pigment inducible by light at germination), c1-n (not inducible)
9.01
   Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: June 16th, 2015
Variation: March 27th, 2013
3 days agopr1 red aleurone1: changes purple aleurone to red; encodes flavonoid 3'-hydroxylase
5.05
GRMZM2G025832
Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: June 3rd, 2011
Variation: June 10th, 2011
Gene Model: September 22nd, 2011
3 days agosm2 salmon silk2: like sm1; silks salmon color with P1-rr and P1-wr, brown with P1-ww
2.07
GRMZM2G180283
Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: May 26th, 2016
Variation: May 26th, 2016
Gene Model: May 26th, 2016
3 days agosut1 sucrose transporter1: mutant plants are deficient in leaf sucrose unloading to pholem; mature leaves hyperaccumulate carbohydrates and display leaf chlorosis with premature senescence
1.02
GRMZM2G034302
Julius, BT et al. 2017. Plant Cell Physiol pp.doi: 10.1093/pcp/pcx090     Reference: September 20th, 2017
Gene Product: September 14th, 2013
Variation: April 16th, 2013
Gene Model: April 16th, 2013
3 days agosut2 sucrose transporter2: mutants grow slower and have increased sugar content in leaves
3.04
GRMZM2G307561
Julius, BT et al. 2017. Plant Cell Physiol pp.doi: 10.1093/pcp/pcx090     Reference: September 20th, 2017
Gene Product: September 14th, 2013
Variation: February 20th, 2017
Gene Model: April 17th, 2013
3 days agofls1 flavonol synthase1: partially complements the flavonol deficiency of the Arabidopsis fls1 mutant
 
GRMZM2G152801
Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: October 10th, 2012
Variation: October 9th, 2012
Gene Model: October 9th, 2012
3 days agofls2 flavonol synthase2: Tightly linked tandem duplication of fls1
 
GRMZM2G069298
Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: October 10th, 2012
Gene Model: October 9th, 2012
3 days agotxln1 taxilin1:
 
GRMZM2G015730
Zhang, Nan et al. 2012. PLoS One 7:e43822     Reference: May 23rd, 2013
Gene Product: May 23rd, 2013
Gene Model: September 20th, 2017
3 days agofns1 flavone synthase1:
 
GRMZM2G167336
Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: September 20th, 2017
Gene Model: May 6th, 2016
4 days agoAY110452  :
1.09
GRMZM2G068259
    Variation: July 29th, 2004
Gene Model: September 19th, 2017
5 days agocct1 CO CO-LIKE TIMING OF CAB1 protein domain1: photoperiod response locus; confers later flowering in teosintes under longer day lengths; many maize inbred lines, including some adapted to tropical regions, have cct1 alleles insensitive to photoperiod (Hung et al 2012)
 
GRMZM2G381691
Li, YP et al. 2017. Theor Appl Genet pp.doi: 10.1007/s00122-017-2978-1   AT5G24930 (TAIR)
LOC_Os07g15770 (MSU/TIGR)
Os07g0261200 (Gramene)
Reference: September 18th, 2017
Gene Product: July 17th, 2012
Variation: July 19th, 2017
Gene Model: July 17th, 2012
5 days agodgk1 diacylglycerol kinase1:
1.05
GRMZM2G076911
Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
5 days agodgk2 diacylglycerol kinase2:
 
GRMZM2G094452
Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
5 days agodgk3 diacylglycerol kinase3:
 
GRMZM2G106578
Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
5 days agodgk4 diacylglycerol kinase4:
 
GRMZM2G019562
Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
5 days agodgk5 diacylglycerol kinase5:
 
GRMZM5G827286
Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
5 days agodgk6 diacylglycerol kinase6:
 
GRMZM2G128214
Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
5 days agodgk7 diacylglycerol kinase7:
 
GRMZM2G062429
Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
5 days agoics1 isochorismate synthase like1:
7.02
GRMZM2G022837
  AT1G18870 (TAIR)
LOC_Os09g19734 (MSU/TIGR)
Gene Product: January 24th, 2014
Gene Model: September 18th, 2017
7 days agoplt2 phospholipid transfer protein homolog2: amino acid sequence, deduced from coleoptile cDNA; SSR locus umc1010
3.09
   Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
7 days agoumc1318  :
10.01
GRMZM5G898755
Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Variation: September 1st, 2003
Gene Model: September 16th, 2017
7 days agocta1 chitinase A1: cDNA sequence corresponds to peptide sequence of maize 28kDa chitinase A
2.04
   Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
7 days agoctb1 chitinase B1: cDNA sequence corresponds to protein sequence of maize chitinase B
10.04
GRMZM2G005633
Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 21st, 2015
7 days agoumc1594  :
3.09
GRMZM2G107839
Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Variation: September 1st, 2003
Gene Model: September 16th, 2017
7 days agophp20075a(gast)  : NCBI: GAST1 protein
10.01
GRMZM2G172596
Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
7 days agoplt1 phospholipid transfer protein homolog1: amino acid sequence, deduced from coleoptile cDNA, homologous to phospholipid transfer proteins
3.06
GRMZM2G127949
Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: March 17th, 2015
Gene Model: March 6th, 2015
7 days agoctn4 chitinase4:
 
GRMZM2G373106
Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Gene Model: September 16th, 2017
7 days agoumi11 Ustilago maydis induced11:
7.00
GRMZM2G450866
Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: January 12th, 2015
Variation: January 11th, 2015
Gene Model: January 11th, 2015
9 days agoxer1 xerico1: Over-expression improves water use efficiency and drought tolerance in transgenic maize plants through reduction in ABA8OX proteins stability and ABA degradation.
2.07
GRMZM2G018070
Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: September 14th, 2017
Gene Model: September 14th, 2017
9 days agoxer3 xerico3:
 
GRMZM2G005840
Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: September 14th, 2017
Variation: September 14th, 2017
Gene Model: September 14th, 2017
9 days agoxer2 xerico2:
 
GRMZM2G393349
Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: September 14th, 2017
Gene Model: September 14th, 2017
9 days agoxer4 xerico4:
 
GRMZM2G029623
Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: September 14th, 2017
Gene Model: September 14th, 2017
10 days agophos3 phosphate transporter3:
 
GRMZM5G872499
Salazar, MN. 2017. Zm00001d018445 structure   LOC_Os02g56510 (MSU/TIGR) Reference: September 13th, 2017
Gene Product: February 27th, 2016
Variation: September 13th, 2017
Gene Model: September 13th, 2017
11 days agokch6 potassium channel6:
8.03
AC234152.1_FG007
Philippar, K et al. 1999. Proc Natl Acad Sci, USA 96:12186-12191     Reference: October 20th, 2008
Gene Product: February 20th, 2008
Variation: April 14th, 2017
Gene Model: September 12th, 2017
11 days agokch7 potassium channel7:
 
GRMZM2G178356
Gao, Y-Q et al. 2017. Plant J pp.doi: 10.1111/tpj.13712     Reference: September 12th, 2017
Gene Product: February 20th, 2008
Variation: September 12th, 2017
Gene Model: September 12th, 2017
11 days agokch8 potassium channel8:
 
GRMZM5G838773
Gao, Y-Q et al. 2017. Plant J pp.doi: 10.1111/tpj.13712     Reference: September 12th, 2017
Gene Product: February 20th, 2008
Gene Model: September 12th, 2017
11 days agokch4 potassium channel4:
3.02
GRMZM2G093313
Gao, Y-Q et al. 2017. Plant J pp.doi: 10.1111/tpj.13712     Reference: September 12th, 2017
Gene Product: February 20th, 2008
Variation: February 20th, 2008
Gene Model: April 22nd, 2011
11 days agokch3 potassium channel3: single copy (Southern blot), function confirmed by expression in Xenopus oocytes (Philippar 2003; Su 2005)
2.06
GRMZM2G081666
Gao, Y-Q et al. 2017. Plant J pp.doi: 10.1111/tpj.13712     Reference: September 12th, 2017
Gene Product: February 20th, 2008
Variation: April 22nd, 2011
Gene Model: April 22nd, 2011
12 days agonpf2 nitrate transporter/peptide transporter family2: encodes a a pH dependent non-biphasic high-affinity nitrate-specific transport protein
 
GRMZM2G161459
Wen, ZY et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00724   AT1G12110 (TAIR) Reference: September 11th, 2017
Gene Product: September 1st, 2003
Variation: September 11th, 2017
Gene Model: September 11th, 2017
12 days agonpf1 nitrate transporter/peptide transporter family1: encodes a low-affinity nitrate transporter with efflux activity; switches to a high-affinity chloride selective transporter, when supplied chloride.
10.03
GRMZM2G086496
Wen, ZY et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00724   AT1G12110 (TAIR) Reference: September 11th, 2017
Gene Product: September 1st, 2003
Variation: September 11th, 2017
Gene Model: September 11th, 2017
15 days agouce3 ubiquitin conjugating enzyme3:
1.01
GRMZM2G070047
Wills, DM et al. 2017. J Hered pp.doi: 10.1093/jhered/esx073     Reference: September 8th, 2017
Gene Product: September 1st, 2003
Variation: February 15th, 2015
Gene Model: February 16th, 2015
15 days agoscmv1 resistance to sugarcane mosaic virus1: resistance requires dominant factors Scm1 and Scm2; resistance in various inbreds is concordant for SCMV and MDMV, yet recombinants of Scm1 occur with the NOR, whereas none were found for Mdm1 by Simcox et al. (1995)
6.00 - 6.01
GRMZM2G014055
Liu, Q et al. 2017. Molecular Plant 10:483-497     Reference: September 8th, 2017
Gene Product: September 1st, 2003
Variation: June 29th, 2005
Gene Model: September 7th, 2017
15 days agozag6 agamous-like6: Encodes a MADS-box transcription factor homologous to SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 that affects flowering time in Arabidopsis.
 
GRMZM2G026223
Wills, DM et al. 2017. J Hered pp.doi: 10.1093/jhered/esx073     Reference: September 8th, 2017
Variation: June 9th, 2014
Gene Model: June 9th, 2014
15 days agobx12 benzoxazinone synthesis12:
 
GRMZM2G023325
Gaillard, MDP et al. 2017. New Phytol pp.doi: 10.1111/nph.14757     Reference: September 8th, 2017
Gene Product: July 8th, 2013
Variation: July 8th, 2013
Gene Model: July 8th, 2013
15 days agofnsi2 flavone synthase typeI2: Encodes a flavone synthase that is of the soluble Fe2+/2- oxoglutarate-dependent dioxygenase class
 
GRMZM2G475380
Wills, DM et al. 2017. J Hered pp.doi: 10.1093/jhered/esx073   AT5G24530 (TAIR) Reference: September 8th, 2017
Gene Product: August 15th, 2015
Gene Model: August 14th, 2015
16 days agoabp1 auxin binding protein1: putative auxin receptor, single band in Southerns, endoplasmic reticulum and plasma membrane locales (aka axr1, aux311)
3.05 - 3.05
   Leng, PF, et al. 2017. Molecular Plant. 0:doi: 10.1016/j.molp.2017.07.013     Reference: September 7th, 2017
Gene Product: September 1st, 2003
Variation: August 23rd, 2017
16 days agofl3 floury3: endosperm opaque, soft; dosage effect
8.03
GRMZM2G006585
Li, Q et al. 2017. Plant Cell pp.doi: 10.1105/tpc.17.00576     Reference: September 7th, 2017
Gene Product: September 7th, 2017
Variation: September 7th, 2017
Gene Model: September 7th, 2017
16 days agoy1 yellow endosperm1: reduced carotenoid pigments in endosperm; some alleles affect chlorophyll in seedlings (e.g. y1-8549, y1-pb)
6.01
GRMZM2G300348
Swarts, KL, et al. 2017. Science. 357:512-515     Reference: September 7th, 2017
Gene Product: December 14th, 2011
Variation: August 26th, 2014
Gene Model: September 22nd, 2011
16 days agoscmv2 resistance to sugarcane mosaic virus2: dominant Scmv1 and Scmv2 confer resistance
3.04
GRMZM2G116204
Leng, PF, et al. 2017. Molecular Plant. 0:doi: 10.1016/j.molp.2017.07.013     Reference: September 7th, 2017
Variation: June 29th, 2005
Gene Model: September 7th, 2017
16 days agoomt2 Caffeoyl CoA O-methyltransferase2:
9.02
GRMZM2G099363
Yang, Q, et al. 2017. Nature Genetics. 0:doi: 10.1038/ng.3919     Reference: September 7th, 2017
Gene Product: January 5th, 2014
Variation: May 13th, 2016
Gene Model: September 17th, 2014
16 days agoago18b argonaute18b: mutant affects length of central tassel branch
1.08
GRMZM2G457370
Sun, W et al. 2017. J Integr Plant Biol pp.doi: 10.1111/jipb.12596     Reference: September 7th, 2017
Gene Product: August 12th, 2016
Variation: September 7th, 2017
Gene Model: August 12th, 2016
16 days agofbxl1 F-box domain and LRR containing protein1: encodes an F-box domain and a leucine-rich-repeat domain protein
 
GRMZM2G481291
Yang, Q, et al. 2017. Nature Genetics. 0:doi: 10.1038/ng.3919     Reference: September 7th, 2017
Gene Product: July 25th, 2017
Variation: July 25th, 2017
Gene Model: July 25th, 2017
16 days agorlk1 receptor-like protein kinase1: encodes an S-locus receptor-like protein kinase;
 
GRMZM2G099324
Yang, Q, et al. 2017. Nature Genetics. 0:doi: 10.1038/ng.3919     Reference: September 7th, 2017
Gene Product: July 1st, 2015
Variation: July 25th, 2017
Gene Model: July 25th, 2017
16 days agopipf1 Ping-Pong family plant transposase1: encodes a PIF/Ping-Pong family plant transposase
 
GRMZM2G440198
Yang, Q, et al. 2017. Nature Genetics. 0:doi: 10.1038/ng.3919     Reference: September 7th, 2017
Gene Product: July 25th, 2017
Variation: July 25th, 2017
Gene Model: July 25th, 2017
17 days agomgt10 magnesium transporter10: encodes CorA/MRS2/MGT-type magnesium transporter
 
GRMZM2G018706
Li, HY et al. 2017. Plant Mol Biol pp.doi: 10.1007/s11103-017-0645-1     Reference: September 6th, 2017
Gene Product: April 18th, 2016
Gene Model: April 18th, 2016
17 days agobzip127 bZIP-transcription factor 127: similar to Arabidopsis basic leucine zipper transcription factor-like protein (NCBI)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
GRMZM2G175280
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 6th, 2017
Gene Model: September 6th, 2017
18 days agolfy1 leafy1: dominant Lfy1 plants have increased number of leaves above ear
 
   Cui, M et al. 2017. Frontiers Plant Sci 8:1437     Reference: September 5th, 2017
Variation: September 24th, 2015
18 days agowox11 WUSCHEL-related homeobox transcription factor 11:
 
   Zhao Y et al. 2009. Plant Cell. 21:736-48     Reference: September 5th, 2017
Gene Product: August 25th, 2017
21 days agowrky105 WRKY-transcription factor 105: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Cai, RH et al. 2017. Planta pp.doi: 10.1007/s00425-017-2766-9     Reference: September 2nd, 2017
Variation: September 2nd, 2017
22 days agoras11G1 ras-related protein11G1:
 
AC197246.3_FG001
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 24th, 2011
Gene Model: September 1st, 2017
26 days agohxa102 histone acetyltransferase complex component102:
 
GRMZM5G815323
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: August 28th, 2017
Variation: August 28th, 2017
Gene Model: August 28th, 2017
29 days agons2 narrow sheath2: embryonic transcription factor; duplicate factor with ns1; closely related to 2 other WOX3 genes, wox3a and wox3b, aka hb82, hb16 (Grassius named)
4.08
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: June 29th, 2005
29 days agowox9c WUSCHEL related homeobox 9c: late embryo in outer layer of suspensor through leaf 4 stage
 
GRMZM2G409881
Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: September 6th, 2007
Gene Model: December 21st, 2015
29 days agowox9b WUSCHEL related homeobox 9b: expressed in late embryo stages;in suspensor and also, unlike wox9c, in the shoot apical meristem (SAM)
 
GRMZM2G031882
Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: September 6th, 2007
Gene Model: December 21st, 2015
29 days agobnlg2057  :
1.06
GRMZM2G017629
    Variation: September 1st, 2003
Gene Model: August 25th, 2017
29 days agobnl5.59a  : Tests with B-A translocation stocks indicated that the probe does not map to 1L, 1S, 4L, 7L, or 9L and 6L gave false positives.
1.06
GRMZM2G113840
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: August 25th, 2017
29 days agoarr6 ARR-B-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Pan, QC et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00709     Reference: August 25th, 2017
Gene Product: June 30th, 2017
29 days agowox13b WUSCHEL-related homeobox transcription factor 13b:
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
29 days agowox13a WUSCHEL-related homeobox-transcription factor 13a:
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
29 days agohb122 Homeobox-transcription factor 122: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Lowe, KS et al. 2016. Plant Cell pp.10.1105/tpc.16.00124     Reference: October 1st, 2016
Gene Product: August 25th, 2017
29 days agowox3b WUSCHEL-related homeobox 3b: embryonic transcription factor of wox3 gene family, which also includes ns1, ns2, and wox3a. Expression of of all is similar, except wox3a, wox3b are expressed in the shoot apical meristem, unlike ns1 or ns2 (Nardmann et al 2007).
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
29 days agowox5a WUSCHEL-homeobox-transcription factor 5A: embryonic WUSCHEL homeobox transcription factor (Nardmann et al 2007)
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
29 days agowox5b WUSCHEL-homeobox-transcription factor 5b: embryonic transcription factor (Nardmann et al 2007)
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
29 days agohb67 Homeobox-transcription factor 67: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Somssich, M et al. 2016. Development pp.doi: 10.1242/dev.133645     Reference: September 15th, 2016
Gene Product: August 25th, 2017
29 days agowox3a WUSCHEL homeobox 3A: embryonic transcription factor; expression in embryonic leaf similar to wox3b, but distinct from ns1/ns2 also in the wox3 gene family (Nardmann et al 2007)
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: August 24th, 2017
29 days agowox2b WUSCHEL-related homeobox 2b:
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: August 25th, 2017
29 days agowox2a WUSCHEL-related homeobox 2a`: embryonic transcription factor (Nardmann et al 2007)
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
29 days agons1 narrow sheath1: plant brachytic, duplicate factor with ns2; leaf sheath and blade taper, blade widens toward tip; husks narrowed, ears exposed
2.05
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: February 20th, 2015
29 days agowox9a WUSCHEL related homeobox 9a: embryonic transcription factor (Nardmann et al 2007)
 
GRMZM2G133972
Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: January 31st, 2011
Gene Model: December 21st, 2015
29 days agowox4 wuschel-related homeobox4: embryonic WUSCHEL homeobox transcription factor specific to hypocotyl vascular system Nardmann et al 207
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: May 1st, 2016
29 days agowox12a wuschel-related homeobox12A: cDNA ortholog of Arabidopsis wuschel-related homeobox gene
 
   Nardmann, J; Werr, W. 2006. Molecular biology and evolution. 23:2492-2504     Reference: November 6th, 2006
Gene Product: August 25th, 2017
29 days agoIDP1951  :
1.06
GRMZM2G113726
    Variation: March 31st, 2005
Gene Model: August 25th, 2017
30 days agomyb63 MYB-transcription factor 63: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.08
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Variation: August 24th, 2017
30 days agomyb164 MYB-transcription factor 164: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Variation: August 24th, 2017
30 days agocenH3 centromeric histone H3:
6.06
GRMZM2G158526
Zhao, H et al. 2017. Chromosome Res pp.doi: 10.1007/s10577-017-9564-x     Reference: August 24th, 2017
Gene Product: December 24th, 2015
Variation: November 7th, 2012
Gene Model: October 24th, 2011
31 days agouce8 ubiquitin conjugating enzyme8:
5.03
GRMZM2G146374
    Gene Product: September 1st, 2003
Variation: August 23rd, 2017
Gene Model: August 23rd, 2017
31 days agouce1 ubiquitin conjugating enzyme1: endosperm cDNA 2C06C11 (uaz102), similar to plant ubiquitin conjugating enzymes
1.08
GRMZM2G053764
Helentjaris, T et al. 1994. MNL 68:101-104     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: August 23rd, 2017
Gene Model: July 7th, 2017
31 days agouce6 ubiquitin conjugating enzyme6:
 
GRMZM2G018447
    Gene Product: September 1st, 2003
Variation: August 23rd, 2017
Gene Model: July 7th, 2017
31 days agouce7 ubiquitin conjugating enzyme7:
 
GRMZM2G053764
    Gene Product: September 1st, 2003
Variation: August 23rd, 2017
Gene Model: August 23rd, 2017
32 days agoarftf25 ARF-transcription factor 25: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
8.06
GRMZM2G116557
Chen, Q et al. 2017. Frontiers Plant Sci 8:1355     Reference: August 22nd, 2017
Variation: August 22nd, 2017
Gene Model: August 22nd, 2017
32 days agogun1 genomes uncoupled1: ortholog of Arabidopsis GUN1 (At2g31400) pentatricopeptide repeat-containing protein, chloroplastic-like
1.05
GRMZM2G432850
  AT2G31400 (TAIR) Gene Product: December 27th, 2016
Gene Model: August 22nd, 2017
35 days agowrky111 WRKY-transcription factor 111: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Hu, SL et al. 2017. Plant Sci 263:132-141     Reference: August 19th, 2017
Gene Product: July 24th, 2017
Variation: July 24th, 2017
35 days agotar1 tryptophan aminotransferase related1:
6.05
GRMZM2G127160
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: April 30th, 2011
Gene Model: June 4th, 2012
35 days agovt2 vanishing tassel2: inflorescence development; TRP-depenedent auxin synthesis
 
GRMZM2G127308
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791   AT1G70560 (TAIR) Reference: August 19th, 2017
Gene Product: April 30th, 2011
Variation: June 24th, 2011
Gene Model: May 2nd, 2012
35 days agoyuc2 Yucca2:
 
GRMZM2G159393
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: September 12th, 2012
35 days agoyuc4 Yucca4: up-regulated by light irradiation in the 0-1mm tip region
 
GRMZM2G141383
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: June 17th, 2016
35 days agoyuc7 yucca7:
 
GRMZM2G480386
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
35 days agoyuc8 yucca8:
 
GRMZM2G017193
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
35 days agoyuc9 yucca9:
 
GRMZM2G333478
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
35 days agotar2 tryptophan aminotransferase related2:
 
GRMZM2G066345
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: April 30th, 2011
Gene Model: August 19th, 2017
35 days agotar3 tryptophan aminotransferase related3:
6.05
GRMZM2G141810
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: April 30th, 2011
Gene Model: August 22nd, 2013
35 days agoyuc5 Yucca5: transcribed in the root apex (0-5mm)
7.02
GRMZM2G132489
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: June 17th, 2016
36 days agozrp2 Zea root protein2: cDNA expressed in roots and stems
1.07
GRMZM2G106980
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: July 28th, 2016
36 days agoburp8 BURP domain-containing protein-RD22-like8:
4.05
GRMZM2G147756
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
36 days agopop1 putative organelle permease1 :
 
GRMZM2G078154
    Variation: August 18th, 2017
Gene Model: August 18th, 2017
36 days agoburp1 BURP domain-containing protein-RD22-like1: Water deficit caused an 18-fold increase in the expression; expression is not influenced by ABA
 
GRMZM2G446170
Phillips, K; Ludidi, N. 2017. Sci. Rep. 7:8821     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
36 days agoburp2 BURP domain-containing protein-RD22-like2: Water deficit caused a 1.6-fold increase in the expression; expression up-regulated by ABA.
 
GRMZM5G800586
Phillips, K; Ludidi, N. 2017. Sci. Rep. 7:8821     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
36 days agoburp3 BURP domain-containing protein-RD22-like3:
 
GRMZM2G032145
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
36 days agoburp5 BURP domain-containing protein-RD22-like5:
 
GRMZM2G108422
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Gene Model: August 18th, 2017
36 days agoburp6 BURP domain-containing protein-RD22-like6:
 
GRMZM2G113229
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
36 days agoburp7 BURP domain-containing protein-RD22-like7:
 
GRMZM2G146665
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Gene Model: August 18th, 2017
36 days agoburp9 BURP domain-containing protein-RD22-like9:
 
GRMZM2G406170
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
36 days agoburp4 BURP domain-containing protein-RD22-like4:
7.03
GRMZM2G078779
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
37 days agocsu323  : similar to Arabidopsis 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1.04
GRMZM2G036543
Baysdorfer, C. 1996. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: August 17th, 2017
37 days agoumc1297  : similar to Arabidopsis haloacid dehalogenase-like hydrolase domain-containing protein
1.05
GRMZM2G086869
    Variation: October 12th, 2016
Gene Model: August 17th, 2017
38 days agoincw1 cell wall invertase1: full-length cDNA, similar to tobacco and carrot cell-wall invertase; Northerns specific to cell suspension and developing endosperm 28-32 DAP; expressed protein cross-reacts with antibodies to carrot cell-wall invertase; low copy number
5.04
   Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: May 27th, 2015
38 days agomn1 miniature seed1: small, somewhat defective kernel, fully viable; invertase reduced
2.04
   Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: April 13th, 2015
38 days agocsu452  :
1.04
GRMZM2G077897
    Variation: September 1st, 2003
Gene Model: August 16th, 2017
38 days agoles22 lesion22: (was Les*-J2552, les29) dominant leaf lesions,early-medium timing, small size, white color; porphyria
1.04
GRMZM2G044074
Mei, Y et al. 2016. Plant Physiol pp.DOI: 10.1104/pp.16.00172     Reference: May 3rd, 2016
Gene Product: September 1st, 2003
Variation: April 1st, 2015
Gene Model: August 16th, 2017
38 days agoumc1103  :
7.04
GRMZM2G414043
Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Variation: August 16th, 2017
Gene Model: August 16th, 2017
38 days agosbp13 SBP-transcription factor 13: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: December 18th, 2014
38 days agohct12 hydroxycinnamoyltransferase12:
 
GRMZM2G179703
Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: November 7th, 2015
Gene Model: May 18th, 2016
38 days agodek36 defective kernel36: mutant kernels have a small and collapsed appearance at maturity, with a drastic size reduction in both embryo and endosperm; encodes an E+ subgroup PPR protein
 
GRMZM5G892151
Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708   At4g21300 (TAIR) Reference: August 16th, 2017
Gene Product: December 27th, 2016
Variation: March 13th, 2017
Gene Model: March 13th, 2017
38 days agoincw5 invertase cell wall5:
 
GRMZM2G095725
Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708   LOC_Os04g33740 (MSU/TIGR) Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: August 16th, 2017
Gene Model: August 16th, 2017
39 days agosyd1 splayed ATPase1:
6.05
GRMZM2G467799
Nelissen, H et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00269     Reference: July 2nd, 2015
Variation: September 1st, 2003
Gene Model: August 15th, 2017
39 days agoatg13c autophagy13c:
2.03
GRMZM5G825909
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: July 29th, 2004
Gene Model: August 15th, 2017
39 days agopik1 phosphatidylinositol 3-kinase1:
4.05
   Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Gene Product: September 1st, 2003
Variation: September 25th, 2007
39 days agoatg12 autophagy12: Mutants are phenotypically normal and fertile when grown under nutrient-rich conditions. However, when nitrogen-starved, seedling growth is severely arrested, and as the plants mature, they show enhanced leaf senescence and stunted ear development.
 
GRMZM5G842517
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: August 15th, 2017
Gene Model: August 15th, 2017
39 days agovps2 vacuolar protein sorting2:
 
GRMZM2G179662
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Gene Product: August 15th, 2017
Gene Model: August 15th, 2017
39 days agoatg8b autophagy8b:
10.06
GRMZM2G419694
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: March 31st, 2005
Gene Model: August 15th, 2017
39 days agoatg16L autophagy16L:
1.10
GRMZM2G078252
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: August 15th, 2017
Gene Model: August 15th, 2017
40 days agozmm14 Zea mays MADS14: during spikelet development zmm4 probably works as a selector gene which is involved in distinguishing the upper and lower floret
1.02
GRMZM2G099522
Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: August 28th, 2013
Gene Model: August 14th, 2017
40 days agodhar2 dehydroascorbate reductase like2:
 
GRMZM2G005710
    Gene Product: March 28th, 2013
Gene Model: August 14th, 2017
44 days agoc2 colorless2: colorless aleurone, reduced plant and cob color; C2-Idf dominant inhibitor; duplicate factor with whp1 for pollen color and for anthocyanins
4.08
   Eloy, NB et al. 2016. Plant Physiol 173:998-1016     Reference: August 10th, 2017
Gene Product: September 1st, 2003
Variation: November 14th, 2013
44 days agoAY110435  :
6.05
AC204292.4_FG006
    Variation: July 29th, 2004
Gene Model: August 10th, 2017
46 days agoIDPC175  : Sequence shows similarity to Arabidopsis HSP18.2
1.03
GRMZM2G481529
    Variation: August 8th, 2017
Gene Model: August 8th, 2017
46 days agobnlg1953  : similar to Arabidopsis C2H2-like zinc finger protein
1.02
GRMZM2G171073
    Variation: September 1st, 2003
Gene Model: August 8th, 2017
46 days agodng1 DNA glycosylase superfamily protein1:
1.02
GRMZM2G005844
    Variation: August 8th, 2017
Gene Model: July 11th, 2017
46 days agommp66  : Similar to Arabidopsis and Medicago trunculata Phosphatidylinositol-4-phosphate 5-kinase
1.03
GRMZM2G073591
    Variation: August 8th, 2017
Gene Model: August 8th, 2017
46 days agorte1 rotten ear1: mutants show distinct defects in vegetative and reproductive development, eventually causing widespread sterility in its tassel and ear.
1.05
GRMZM2G166159
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: July 21st, 2014
Gene Model: July 19th, 2014
46 days agorte2 rotten ear2: mutants strongly enhance the phenotype of rte1 mutants in soils with low boron content, producing shorter plants that fail to form all reproductive structures
 
GRMZM2G082203
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: June 24th, 2017
Gene Model: June 24th, 2017
46 days agorte3 rotten ear3: phylogenetically related to Class II clade boron transporters
 
GRMZM2G051753
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: June 24th, 2017
Gene Model: June 24th, 2017
46 days agorte4 rotten ear4: phylogenetically related to Class II clade boron transporters
 
GRMZM2G374989
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
46 days agorte5 rotten ear5: phylogenetically related to Class II clade boron transporters
 
GRMZM2G302559
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
46 days agorte6 rotten ear6: phylogenetically related to Class II clade boron transporters
 
GRMZM2G454327
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
49 days agodhn13 dehydrin13:
1.09
GRMZM2G169372
Liu, Y et al. 2017. Sci. Rep. 7:7361     Reference: August 5th, 2017
Gene Product: August 5th, 2017
Variation: October 13th, 2016
Gene Model: October 14th, 2016
49 days agodhn6 dehydrin6:
3.07
GRMZM2G031308
Chen, J et al. 2002. Unpublished submission to Genbank Jan 2002     Reference: July 15th, 2008
Gene Product: August 5th, 2017
Variation: February 9th, 2014
Gene Model: July 27th, 2016
49 days agorps15 ribosomal proteinS15: cDNA sequences, SSR umc1564
5.02
GRMZM5G869564
    Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: August 5th, 2017
49 days agodhn3 dehydrin3:
4.06
GRMZM2G373522
    Gene Product: August 5th, 2017
Variation: June 18th, 2011
Gene Model: October 16th, 2016
49 days agodhn7 dehydrin7:
 
GRMZM2G002786
Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194     Reference: January 11th, 2009
Gene Product: August 5th, 2017
Variation: February 9th, 2014
Gene Model: July 27th, 2016
49 days agostk4 serine-threonine kinase4: Expression responds to available phosphate, and its expression up-regulated under phosphate starvation.
 
GRMZM2G156013
Azad, I; Alemzadeh, A. 2017. Molecular Cell Biology Research Communications 6:65-75     Reference: August 5th, 2017
Gene Product: May 13th, 2014
Variation: August 5th, 2017
Gene Model: August 5th, 2017
49 days agodhn14 dehydrin14:
 
GRMZM2G448511
Liu, Y et al. 2017. Sci. Rep. 7:7361     Reference: August 5th, 2017
Gene Product: August 5th, 2017
Gene Model: August 5th, 2017
50 days agorpe1 Ribulose-phosphate 3-epimerase1:
1.02
       Variation: August 4th, 2017
50 days agommp135  : similar to Arabidopsis no pollen germination related 1
1.02
GRMZM2G015219
    Variation: August 4th, 2017
Gene Model: August 4th, 2017
50 days agoras11E1 ras-related protein11E1:
 
GRMZM2G164527
    Variation: January 24th, 2011
Gene Model: August 4th, 2017
52 days agoroa1 replication origin activator1: cDNA Z29368, homology with yeast and vertebrate DNA licensing activity; orthologs in barley and Arabidopsis, highly conserved
 
GRMZM2G100639
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Variation: January 21st, 2011
Gene Model: June 1st, 2017
52 days agomcm2 minichromosome maintenance2: a cell cycle gene regulated by tb1
3.05
GRMZM2G112074
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071   AT4G02060 (TAIR) Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Variation: July 31st, 2017
Gene Model: July 30th, 2017
52 days agomcm1 minichromosome maintenance1:
 
GRMZM2G065205
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047   AT4G02060 (TAIR) Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 30th, 2017
52 days agomcm6 minichromosome maintenance6: Essential for both vegetative as well as reproductive growth and development in plants.
 
GRMZM2G021069
Dresselhaus, T et al. 2006. Plant Physiol 140:512-527   AT5G44635 (TAIR) Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
52 days agomcm7 minichromosome maintenance7:
 
GRMZM2G139894
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
52 days agomcm4 minichromosome maintenance4:
 
GRMZM2G066101
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
52 days agomcm5 minichromosome maintenance5:
5.08
GRMZM2G075978
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
53 days agobnlg149  :
1.00
GRMZM5G833153
    Variation: September 1st, 2003
Gene Model: August 1st, 2017
53 days agokrp17 kinesin heavy chain17:
1.01
GRMZM2G092232
    Variation: September 1st, 2003
Gene Model: August 1st, 2017
53 days agoaic1 auxin import carrier1: cDNA encoding a protein with a deduced amino acid showing 73% identity to AtAUX1.
1.05
GRMZM2G129413
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114   AT2G21050 (TAIR) Reference: August 1st, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: November 21st, 2015
53 days agopin4 PIN-formed protein4: auxin efflux carriter similar to Arabidopsis PIN1 (Forestan et al 2012), but from PIN clade not found in all flowering plants save for the Brassicacease (O'Connor 2014 et al
4.08
GRMZM2G171702
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
53 days agoaic2 auxin import carrier2:
 
GRMZM2G045057
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114   AT2G21050 (TAIR) Reference: August 1st, 2017
Gene Product: September 1st, 2003
Variation: August 1st, 2017
Gene Model: August 1st, 2017
53 days agopin2 PIN-formed protein2: see pin1
5.06
GRMZM2G074267
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Variation: June 11th, 2007
Gene Model: June 7th, 2012
53 days agopin1 PIN-formed protein1: gene product cross-reacts with anti-AtPIN1 antibody and in tassel and ear, the PIN proteins are localized to a group of cells in subepidermal meristematic layers.
9.01
GRMZM2G398650
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Variation: January 20th, 2015
Gene Model: June 7th, 2012
54 days agocg1 corngrass1: semidominant Cg1 plants have narrow leaves, extreme tilleringCg1 encodes two tandem miR156 genes that are overexpressed in the meristem and lateral organs. George Chuck, 2007
3.02
GRMZM2G022489
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: June 17th, 2016
Variation: August 25th, 2011
Gene Model: April 5th, 2013
Recommended by George Chuck:
September 25th, 2007
54 days agopcna2 proliferating cell nuclear antigen2: a cell cycle gene regulated by tb1
4.07
GRMZM2G108712
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: September 1st, 2003
Variation: August 23rd, 2014
Gene Model: August 23rd, 2014
Recommended by Ed Coe:
January 8th, 2008
54 days agogt1 grassy tillers1: numerous basal branches; vegetatively totipotent in combination with id1 and factors for perennialismputative transcription factor that reduces branching, and is induced by shade
1.04
GRMZM2G005624
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: March 5th, 2012
Variation: August 18th, 2011
Gene Model: March 5th, 2012
54 days agotb1 teosinte branched1: many tillers; ear branches tassel-like; affects apical dominanceGRASSIUS: TCP transcription factor (TCP1)
1.09
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: September 14th, 2016
Variation: February 2nd, 2017
54 days agotu1 tunicate1: dominant Tu1 ears develop long glumes enclosing individual kernels; tassels develop large, coarse glumes and sex reversal; both inflorescences become grossly vegetative and sterile in homozygotes
4.08 - 4.08
GRMZM2G370777
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: June 12th, 2012
Variation: February 3rd, 2011
Gene Model: May 9th, 2012
54 days agonot1 neighbor of tga1: compared to tga1, expressed much higher in maize than teosinte; INDEL probe (Preston et al 2011)
 
AC233751.1_FG002
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: December 18th, 2014
Variation: May 7th, 2015
Gene Model: October 28th, 2011
54 days agotga1 teosinte glume architecture1: glumes indurated, erect, long, boat-shaped; factor transferred from teosinte
4.05
GRMZM2G101511
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: December 18th, 2014
Variation: May 7th, 2015
Gene Model: October 28th, 2011
54 days agophyB1 phytochromeB1: phyB1 mutants have elongated mesocotyl under red light. Double mutant with phyB2 is pale, narrow with elongated leaf blades, elongated internodes, less anthocyanin in sheath tissues, and earlier flowering time.
1.03
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: October 24th, 2007
Variation: February 1st, 2015
54 days agozap1 zea apetala homolog1:
2.10
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Variation: February 2nd, 2011
54 days agozmm2 Zea mays MADS2: cDNA similar to zag1 (Schmidt et al., 1993), and to AGAMOUS of Arabidopsis; zmm2 and zag1, like zmm1 and zag2, are possibly duplications phylogenetically; expression preferentially in the tassel
8.03
   Kelliher, T et al. 2014. Frontiers Plant Sci 5:347     Reference: August 8th, 2014
Gene Product: September 1st, 2003
Variation: July 31st, 2017
54 days agozag1 Zea AGAMOUS homolog1: amino acid sequence, deduced from cDNA to inflorescence mRNA, 61% identical to Arabidopsis floral homeotic gene protein AG1; expression strong in female inflorescence; possibly pt1; SSR umc1187
6.05
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: September 1st, 2003
Variation: January 2nd, 2015
54 days agozag2 Zea AGAMOUS homolog2: amino acid sequence, deduced from cDNA sequence, has 49% identity to Arabidopsis, floral homeotic gene product; expression restricted to female inflorescence; near ts4
3.05 - 3.05
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: April 1st, 2011
Variation: October 22nd, 2014
54 days agoyab12 C2C2-YABBY-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
GRMZM2G167824
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: October 16th, 2015
Gene Model: July 3rd, 2012
54 days agofen1 flap endonuclease1: required for DNA repair
6.07
GRMZM2G121262
Dresselhaus, T et al. 2006. Plant Physiol 140:512-527   AT5G26680 (TAIR) Reference: July 31st, 2017
Gene Product: July 31st, 2017
Variation: July 31st, 2017
Gene Model: July 31st, 2017
58 days agowc1 white cap1: dominant Wc1 kernels have pale yellow endosperm if Y1 (pearly white with y1); whiteness is emphasized in soft-starch crowns
9.07
   Tan, BC, et al. 2017. Genetics. 206:135-150     Reference: July 27th, 2017
Gene Product: September 20th, 2012
Variation: October 5th, 2012
58 days agohac101b histone acetyltransferase101b:
1.05
GRMZM2G335438
    Gene Product: November 6th, 2003
Variation: September 1st, 2003
Gene Model: July 27th, 2017
58 days agodrl2 drooping leaf2: mutant enhances the phenotype of ifa1 mutants (a.k.a. drl1)
9.06
GRMZM2G102218
Strable, J, et al. 2017. Plant Cell. 0:doi: 10.1105/tpc.16.00477   AT1G69180 (TAIR)
LOC_Os03g11600 (MSU/TIGR)
Reference: July 27th, 2017
Gene Product: October 16th, 2015
Variation: July 12th, 2017
Gene Model: October 16th, 2015
58 days agoifa1 indeterminate floral apex1: mutants have perturbed floral and inflorescence meristems as well as droopy leaves with increased angle
 
GRMZM2G088309
Strable, J, et al. 2017. Plant Cell. 0:doi: 10.1105/tpc.16.00477   AT1G69180 (TAIR)
LOC_Os03g11600 (MSU/TIGR)
Reference: July 27th, 2017
Gene Product: October 16th, 2015
Variation: July 13th, 2017
Gene Model: October 16th, 2015
58 days agohyd6 hydroxylase6: beta-carotene hydroxylase
 
GRMZM5G826824
Owens, BF, et al. 2014. Genetics. 198:1699-1716     Reference: January 1st, 2015
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
Gene Model: July 27th, 2017
58 days agoimd4 isopropylmalate dehydrogenase4:
 
GRMZM2G120857
    Gene Product: September 1st, 2003
Gene Model: July 27th, 2017
60 days agomyb3  : single copy; encodes WD-repeat protein
5.04
GRMZM2G099334
Carey, C; Strahle, JT; Selinger, D; Chandler, V. 2004. Plant Cell. 16:450-464     Reference: June 7th, 2004
Gene Product: July 25th, 2017
Variation: May 28th, 2015
Gene Model: May 28th, 2015
60 days agomyb89 MYB-transcription factor 89: homology to R2R3 Myb genes
 
GRMZM2G040924
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Gene Model: June 24th, 2016
60 days agomybr36 MYB-related-transcription factor 36: single copy genomic; similar to R2R3 Myb genes
2.02
GRMZM2G014534
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Gene Model: June 23rd, 2016
60 days agomyb14 MYB-transcription factor 14: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Xiao, QL et al. 2017. FEBS J pp.doi: 10.1111/febs.14179     Reference: July 21st, 2017
Gene Product: July 25th, 2017
60 days agofdx3 ferredoxin3: ubiquitous, cDNA clone, gene specific probe, amino acid sequence; SSR umc1064, pFD3
1.11
GRMZM2G053458
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: January 29th, 2015
Gene Model: July 25th, 2017
60 days agomyb45 MYB-transcription factor 45: single copy genomic clone asg8 contains myb motifNCBI: myb domain protein 4r1Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.01
GRMZM2G051793
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: July 25th, 2017
Gene Model: April 7th, 2017
61 days agote1 terminal ear1: stalked ear appendages at tip; varying to infolded ears
3.05
   Mendes-Moreira, P et al. 2015. PLoS One 10:e0124543     Reference: April 30th, 2015
Gene Product: September 1st, 2003
Variation: July 24th, 2017
61 days agowrky122 WRKY-transcription factor 122: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Hong, CY et al. 2016. Biochem Biophys Res Commun pp.doi: 10.1016/j.bbrc.2016.12.064     Reference: December 14th, 2016
Gene Product: July 24th, 2017
Variation: December 14th, 2016
61 days agowrky29 WRKY-transcription factor 29: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: July 24th, 2017
61 days agowrky98 WRKY-transcription factor 98: NCBI: probable WRKY transcription factor 12 (similarity to Arabidpsis gene)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.06
GRMZM2G377217
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 24th, 2017
Variation: March 15th, 2017
Gene Model: March 15th, 2017
61 days agowrky16 WRKY-transcription factor 16: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.08
GRMZM2G063216
Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: July 24th, 2017
Gene Model: December 6th, 2016
61 days agonl3 narrow leaf3: mutant leaves are ~12% narrower
 
   Brewbaker, JL. 2010. MNL 84:in press     Reference: July 24th, 2017
Variation: January 21st, 2011
61 days agolw5 lemon white5: Duplicate factor for lemon endosperm/white seedling with lw6 (Stinard, MNL 86).
 
   Stinard, PS. 2013. MNL 86:29-31     Reference: March 10th, 2014
Variation: July 24th, 2017
61 days agolw6 lemon white6: Duplicate factor for lemon endosperm/white seedling with lw5 (Stinard, MNL 86).
 
   Stinard, PS. 2013. MNL 86:29-31     Reference: March 10th, 2014
Variation: July 24th, 2017
63 days agoga20ox1 gibberellin 20-oxidase1:
1.12
AC203966.5_FG005
Nelissen, H et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12801     Reference: July 22nd, 2017
Gene Product: October 28th, 2014
Gene Model: October 27th, 2014
64 days agobt1 brittle endosperm1: mature kernel collapsed, angular, often translucent and brittle (alleles sh3, sh5)
5.04
   Xiao, QL et al. 2017. FEBS J pp.doi: 10.1111/febs.14179     Reference: July 21st, 2017
Gene Product: February 24th, 2015
Variation: January 28th, 2014
65 days agobnlg2238  :
1.04
GRMZM2G016480
    Variation: September 1st, 2003
Gene Model: July 20th, 2017
65 days agobnlg2295  :
1.04
GRMZM2G143703
    Variation: September 29th, 2010
Gene Model: July 20th, 2017
65 days agoko1 kaurene oxidase1:
 
GRMZM2G059308
Mao, HJ et al. 2017. Biotechnol Lett pp.doi: 10.1007/s10529-017-2401-7     Reference: July 20th, 2017
Gene Product: October 27th, 2014
Gene Model: October 27th, 2014
65 days agoko2 kaurene oxidase2:
 
GRMZM2G161472
Mao, HJ et al. 2017. Biotechnol Lett pp.doi: 10.1007/s10529-017-2401-7     Reference: July 20th, 2017
Gene Product: October 27th, 2014
Gene Model: October 27th, 2014
67 days agolox3 lipoxygenase3:
3.06
   Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: November 14th, 2014
67 days agots1 tassel seed1: tassel pistillate and pendant; if removed, small ear with irregular kernel placement develops
2.04 - 2.05
   Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
67 days agolox10 lipoxygenase10: green leaf volatiles, circadian, herbivore defense; sequence predicts plastidic location; images show location in non-chlorophyll containing organelles
4.09
GRMZM2G018424
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 6th, 2014
Gene Model: October 23rd, 2013
67 days agolox6 lipoxygenase6:
2.02
GRMZM2G040095
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
67 days agolox1 lipoxygenase1: Full length cDNA is expressed in E. coli (Kim et al. 2003)
3.06
   Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: November 13th, 2014
Variation: July 24th, 2008
67 days agolox2 lipoxygenase2:
3.06
GRMZM2G156861
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: July 18th, 2017
Gene Model: June 10th, 2014
67 days agolox4 lipoxygenase4:
1.09
GRMZM2G109056
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
67 days agolox5 lipoxygenase5:
5.02
GRMZM2G102760
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
67 days agolox7 lipoxygenase7:
10.04
GRMZM2G070092
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: April 23rd, 2009
Gene Model: June 10th, 2014
67 days agolox9 lipoxygenase9:
1.02
GRMZM2G017616
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 12th, 2014
Gene Model: October 23rd, 2013
67 days agolox11 lipoxygenase11:
5.04
GRMZM2G009479
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 10th, 2014
Gene Model: June 10th, 2014
67 days agolox12 lipoxygenase12: single copy, required for resistance to Fusarium stalk and ear rot
3.04
GRMZM2G106748
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: November 13th, 2014
Variation: August 15th, 2014
Gene Model: June 10th, 2014
67 days agolox13 lipoxygenase13:
 
GRMZM5G822593
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Gene Model: July 18th, 2017
70 days agopspb2 photosystem II oxygen evolving polypeptide2: sequence highly similar to OEC23 oxygen evolving complex protein of photosystem II; located peripheral to lumenal side of thylakoid (Huang et al 2013)
 
GRMZM2G047954
Huang, M et al. 2013. J Proteome Res 12:491-504     Reference: August 5th, 2014
Gene Product: September 1st, 2003
Gene Model: July 15th, 2017
70 days agopspb1 photosystem II oxygen evolving polypeptide1: sequence similar to OEC23 photosystem II polypeptide; located by Huang et al 2013 to thylakoid peripheral on lumen side
 
GRMZM2G016677
Huang, M et al. 2013. J Proteome Res 12:491-504     Reference: August 5th, 2014
Gene Product: September 1st, 2003
Gene Model: July 15th, 2017
71 days agobnlg1564  :
1.07
GRMZM5G821828
    Variation: September 1st, 2003
Gene Model: July 14th, 2017
72 days agoumc1627  : cDNA sequences; SSR umc1627; see also loci probed by umc171 and npi472
8.03
GRMZM2G156857
Sheen, J et al. 1987. Plant Mol Biol 9:217-226     Reference: September 1st, 2003
Variation: July 13th, 2017
Gene Model: July 14th, 2015
73 days agobnlg1484  :
1.03
GRMZM2G019567
    Variation: September 1st, 2003
Gene Model: July 12th, 2017
73 days agobnlg1556  :
1.07
GRMZM2G028726
    Variation: September 1st, 2003
Gene Model: July 12th, 2017
74 days agobnlg1014  :
1.01
GRMZM2G020548
    Variation: September 1st, 2003
Gene Model: July 11th, 2017
74 days agobnlg1025  :
1.07
GRMZM2G078088
    Variation: September 1st, 2003
Gene Model: July 11th, 2017
74 days agobnlg1331  :
1.09
GRMZM2G466385
    Variation: September 1st, 2003
Gene Model: July 11th, 2017
76 days agoelfg1 elongation factor gamma1: endosperm cDNA 5C04C04 (uaz161), similar to Trypanosoma translation factor
6.04
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: July 9th, 2017
76 days agoelfa11 elongation factor alpha11:
 
AC233866.1_FG006
    Variation: July 9th, 2017
Gene Model: July 8th, 2017
77 days agoms7 male sterile7: like ms2; tapetal cell dysfunction
7.02
GRMZM5G890224
Zhang, DF et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12786   AT5G22260 (TAIR)
LOC_Os09g27620 (MSU/TIGR)
Os09g0449000 (Gramene)
Reference: July 6th, 2017
Gene Product: July 8th, 2017
Variation: July 6th, 2017
Gene Model: July 6th, 2017
77 days agoiaa28 Aux/IAA-transcription factor 28: gene product physically interacts with LA1 (Dong et al 2013)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Dong, Z, et al. 2013. Plant Physiol. 163:1306-1322     Reference: November 22nd, 2013
Variation: July 8th, 2017
77 days agodof47 C2C2-Dof-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Chen, Y; Cao, J. 2014. Plant Mol Biol Rep pp.doi: 10.1007/s11105-014-0835-9     Reference: November 26th, 2014
Variation: July 8th, 2017
77 days agoelfa1 elongation factor alpha1: (was csu116) multiple copies; leaf cDNA csu116, partial sequence identical to a tomato elongation factor
8.03
GRMZM2G151193
Berberich, T et al. 1995. Plant Mol Biol 29:611-615     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 8th, 2017
Gene Model: July 8th, 2017
77 days agoeif2 elongation initiation factor2: etiolated leaf cDNA 6C02E11(uaz224) similar to eIF-2 gamma chain
7.04
GRMZM2G107654
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: July 8th, 2017
Gene Model: January 13th, 2015
77 days agocyp13 cytochrome P450 13: encodes CYP97A
 
GRMZM5G837869
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Variation: July 8th, 2017
Gene Model: April 8th, 2013
78 days agoccamk1 calcium/calmodulin dependent protein kinase1: involved in ABA signaling (Ma et al 2012)
 
GRMZM2G062772
Ma, F; et al. 2012. J Exp Bot. 63:4835-47     Reference: April 23rd, 2013
Gene Product: December 3rd, 2013
Variation: July 7th, 2017
Gene Model: April 23rd, 2013
78 days agoarftf11 ARF-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
78 days agoarftf23 ARF-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
78 days agoarftf26 ARF-transcription factor 26: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
78 days agofea4 fasciated ear4: Mutants are semidwarfed with fasciated ears and tassels as well as greatly enlarged vegetative and inflorescence meristems.
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: January 27th, 2015
Variation: July 7th, 2017
78 days agoimp1 importin1: leaf cDNA csu244 similar to importin
8.03
   Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 7th, 2017
78 days agombd119 methyl binding domain119:
1.06
GRMZM2G301098
Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: December 24th, 2015
Variation: February 6th, 2010
Gene Model: July 7th, 2017
78 days agocax3 calcium exchanger3: Expression affected by ABP4, auxin, and Ca++. Homolog of Arabidopsis CAX1 involved in auxin transduction pathway.
3.09
GRMZM2G011592
Jurisic-Knezev, D; Bergougnoux, V; Milde, D; Fellner, M. 2014. Botany. 92:332-339     Reference: June 5th, 2014
Variation: July 7th, 2017
Gene Model: June 6th, 2014
78 days agoao2 aldehyde oxidase2:
5.01
GRMZM5G899851
Owens, BF, et al. 2014. Genetics. 198:1699-1716     Reference: January 1st, 2015
Gene Product: October 4th, 2014
Gene Model: July 7th, 2017
78 days agoabh4 abscisic acid 8'-hydroxylase4:
7.02
GRMZM2G065928
Vallabhaneni, R; Wurtzel, E. 2010. Arch Biochem Biophys. 504:112-7     Reference: February 15th, 2013
Gene Product: February 15th, 2013
Variation: March 31st, 2005
Gene Model: July 7th, 2017
79 days agocpps2 copalyl diphosphate synthase2: encodes ent-kaurene synthase, a copalyl diphosphate synthase protein having close identity with An1 gene product; likely duplicate function explains why an1 plants are not fully dwarfed (Harris et al. 2005)
1.04
GRMZM2G044481
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: August 16th, 2012
Variation: December 28th, 2015
Gene Model: September 12th, 2011
Recommended by Ed Coe:
January 8th, 2008
79 days agoga2ox1 gibberellin 2-oxidase1: Bolduc and Hake (Plant Cell 21:1647-58, 2009) identify this ga2ox as ga2ox1 by phylogeny. See Supplemental Figure 6. Comparison of syntenic regions containing ga2ox1 in different grasses. They also show that it is a direct target of KN1.
 
GRMZM2G078798
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: October 27th, 2014
Variation: November 20th, 2012
Gene Model: November 20th, 2012
79 days agobnl9.11b(lts)  :
1.04
GRMZM2G067371
    Gene Product: September 1st, 2003
Gene Model: July 6th, 2017
79 days agobhlh43 bHLH-transcription factor 43: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.08
GRMZM2G165042
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: July 6th, 2017
79 days agopif3 phytochrome interacting factor3: ortholog of Arabidopsis PIF3; nuclear localized protein; transgenic expression in rice suggest role in stress response (Gao Y et al 2015)
 
GRMZM2G387528
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT1G09530 (TAIR)
LOC_Os05g04740 (MSU/TIGR)
Reference: July 6th, 2017
Gene Product: September 14th, 2016
Gene Model: May 26th, 2015
79 days agoga20ox5 gibberellin 20-oxidase5:
 
GRMZM2G060940
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: October 28th, 2014
Variation: July 6th, 2017
Gene Model: October 27th, 2014
79 days agokao2 kaurenoic acid oxidase2:
 
GRMZM2G089803
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: August 15th, 2012
Gene Model: October 29th, 2014
79 days agobrc1 brassinosteroid catabolism1: member of BR catabolic gene family
 
GRMZM2G107322
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT2G26710 (TAIR)
LOC_Os02g11020 (MSU/TIGR)
Reference: July 6th, 2017
Gene Product: July 6th, 2017
Gene Model: July 6th, 2017
79 days agobrc2 brassinosteroid catabolism2: member of BR catabolic gene family
 
GRMZM5G852663
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT2G26710 (TAIR)
LOC_Os02g11020 (MSU/TIGR)
Reference: July 6th, 2017
Gene Product: July 6th, 2017
Gene Model: July 6th, 2017
80 days agouaz248a(his3)  :
1.04
GRMZM2G176358
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 5th, 2017
Gene Model: July 5th, 2017
80 days agouaz248b(his3)  :
5.05
GRMZM2G176358
Shen, B; Carneiro, N; Torres-Jerez, I; Stevenson, B; McCreery, T; Helentjaris, T; Baysdorfer, C; Alm. 1994. Plant Mol Biol 26:1085-1101     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: July 5th, 2017
85 days agosdg110b  :
2.06
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
85 days agocrr8 cytokinin response regulator8:
1.02
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: April 25th, 2008
85 days agocrr2 cytokinin response regulator2: single copy, cDNA and genomic sequences; SSRs umc1569, umc1344; induced by cytokinin, and inorganic nitrogen
10.07
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: June 30th, 2017
Variation: October 1st, 2015
85 days agocrr1 cytokinin response regulator1: single copy,cDNA and genomic sequences; induced in leaf by cytokinin, and inorganic nitrogen; SSR umc1622
2.01 - 2.01
GRMZM2G040736
Deji, A et al. 2002. Biosci Biotechnol Biochem 66: 1853-1858     Reference: July 14th, 2007
Gene Product: June 30th, 2017
Gene Model: October 23rd, 2013
85 days agoarr1 ARR-B-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
85 days agoarr2 ARR-B-transcription factor 2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
85 days agoarr4 ARR-B-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
85 days agoarr5 ARR-B-transcription factor 5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
85 days agoarr7 ARR-B-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
85 days agosdg128 set domain gene128: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   LOC_Os09g04890 (MSU/TIGR) Reference: June 29th, 2017
Gene Product: June 30th, 2017
Variation: June 29th, 2017
85 days agomez1 enhancer of zeste1:
6.01
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: June 30th, 2017
Variation: July 3rd, 2015
85 days agomez2 enhancer of zeste2:
9.04
GRMZM5G875502
Springer, N et al. 2002. Plant Physiol 128:1332-1345     Reference: January 5th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: July 28th, 2016
85 days agomez3 enhancer of zeste3:
1.03
GRMZM2G043484
Springer, N et al. 2002. Plant Physiol 128:1332-1345     Reference: January 5th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2014
Gene Model: September 2nd, 2014
85 days agosdg101 set domain gene101:
7.02
AC233961.1_FG001
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
85 days agosdg102 set domain gene102:
2.04
GRMZM2G147619
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg104 SET domain-containing protein SET104:
2.03
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
85 days agosdg105 set domain gene105:
8.05 - 8.05
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
85 days agosdg106 set domain gene106:
2.07
GRMZM2G409213
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg107 set domain gene107:
2.03
GRMZM2G357972
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg108 set domain gene108:
4.04
GRMZM2G149153
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg110a set domain gene110a:
7.02
GRMZM2G130910
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg111 set domain gene111:
6.06
GRMZM2G117458
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg113 set domain gene113:
3.06
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
85 days agosdg115 set domain gene115:
3.08
GRMZM2G033350
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg116 set domain gene116:
2.07
GRMZM2G105869
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg118 set domain gene118:
8.06
GRMZM2G054380
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg119 set domain gene119:
2.06
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
85 days agosdg123 SET domain protein123: histone methylation; one of 3 with disrupted (S-ET) domains among 22 SET domain proteins
1.08
GRMZM2G080462
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: February 2nd, 2015
Gene Model: February 2nd, 2015
85 days agosdg129 set domain gene129:
5.03
GRMZM2G305124
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
85 days agosdg122 set domain gene122:
1.02
GRMZM2G091916
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
85 days agocrr7 cytokinin response regulator7:
 
GRMZM2G096171
Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Gene Model: December 19th, 2015
85 days agoatx3 arabidopsis trithorax homolog3:
 
GRMZM2G372928
Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g11952 (MSU/TIGR)
Reference: June 29th, 2017
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
85 days agoatx4 arabidopsis trithorax homolog4:
 
GRMZM2G085266
Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g11952 (MSU/TIGR)
Reference: June 29th, 2017
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
85 days agoatx5 arabidopsis trithorax homolog5:
 
GRMZM2G179814
Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g46700 (MSU/TIGR)
Reference: June 29th, 2017
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
85 days agosdg117 set domain gene117:
 
GRMZM2G172427
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
85 days agosdg127 set domain gene127:
 
GRMZM2G473138
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
85 days agosdg130 set domain gene130:
 
GRMZM2G457881
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
85 days agoarr8 ARR-B-transcription factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.08
GRMZM2G479110
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: June 30th, 2017
Gene Model: June 30th, 2017
85 days agocrr5 cytokinin response regulator5:
3.05
   Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Variation: March 31st, 2005
85 days agosdg103 SET domain group 103:
 
GRMZM2G074094
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
85 days agocrr4 cytokinin response regulator4:
8.06
GRMZM2G319187
Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Gene Model: December 19th, 2015
85 days agoasg75  : NCBI: similar to Arabidopsis lipase class 3 family protein
1.04
GRMZM5G882821
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: September 19th, 2009
Gene Model: June 30th, 2017
3 months agoali1 aladin1:
 
       Variation: June 23rd, 2017
3 months agoumc2236  : similar to Arabidopsis glutamate decarboxylase 1 based on LOC100501579
1.06
GRMZM2G017110
    Variation: June 16th, 2017
Gene Model: June 16th, 2017
3 months agoumc2230  : NCBI:probable xyloglucan endotransglucosylase/hydrolase protein 27
1.05
GRMZM2G070271
    Variation: January 10th, 2017
Gene Model: June 15th, 2017
3 months agoumc2231  : NCBI: vacuolar amino acid transporter 1-like
1.05
GRMZM2G017170
    Variation: January 10th, 2017
Gene Model: June 15th, 2017
3 months agoumc1948  :
1.01
GRMZM2G172758
    Variation: May 10th, 2016
Gene Model: June 14th, 2017
3 months agosirk1 sucrose-induced receptor kinase1: expression is altered in response to drought stress
 
GRMZM2G161664
Aquino, B et al. 2017. Frontiers Plant Sci pp.doi: 10.3389/fpls.2017.00852   AT5G10020 (TAIR) Reference: June 14th, 2017
Gene Product: July 1st, 2015
Gene Model: June 13th, 2017
3 months agoumc1603  :
1.05
GRMZM2G127739
    Variation: November 17th, 2016
Gene Model: June 13th, 2017
3 months agofha2 FHA-transcription factor 2:
1.06
GRMZM2G424241
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: June 9th, 2017
3 months agoumc1111  : Seed specific protein Bn15D14A
1.11
GRMZM2G163912
    Variation: September 21st, 2016
Gene Model: June 9th, 2017
3 months agoumc1123  :
1.06
GRMZM5G854901
    Variation: September 1st, 2003
Gene Model: June 9th, 2017
3 months agoumc1128  : CDPK-related kinase 3-like
1.07
GRMZM2G031893
    Variation: September 1st, 2003
Gene Model: June 9th, 2017
3 months agoAY110479  :
1.11
GRMZM2G087612
    Variation: July 29th, 2004
Gene Model: June 8th, 2017
3 months agoAY110632  :
1.03
GRMZM2G032047
    Variation: July 29th, 2004
Gene Model: June 8th, 2017
3 months agoAY110640  : similar to Arabidopsis RNA pseudouridine synthase 5
1.03
GRMZM2G158261
    Variation: July 29th, 2004
Gene Model: June 8th, 2017
3 months agoBE639426  :
1.10
GRMZM2G301071
    Variation: July 29th, 2004
Gene Model: June 8th, 2017
3 months agohagtf3 GNAT-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: June 7th, 2017
3 months agoAY110052  :
1.03
GRMZM2G141799
    Variation: September 25th, 2007
Gene Model: June 7th, 2017
3 months agoAY110159  : similar to M. trunculata Chloroplast inner envelope protein
1.07 - 1.08
GRMZM5G888696
    Variation: July 29th, 2004
Gene Model: June 7th, 2017
3 months agoAY110296  : similar to M. trunculata Ubiquitin and WLM domain-containing protein
1.06
GRMZM2G115981
    Variation: March 21st, 2006
Gene Model: June 7th, 2017
3 months agoAY110396  :
1.05
GRMZM2G110572
    Variation: July 29th, 2004
Gene Model: June 7th, 2017
3 months agoAI855190  :
1.05
GRMZM2G443525
    Variation: July 29th, 2004
Gene Model: June 6th, 2017
3 months agoAY109916  :
1.12
GRMZM2G422649
    Variation: July 29th, 2004
Gene Model: June 6th, 2017
3 months agocap2 calcium pump2: paralog of cap1; calcium-transporting ATPase
1.03
GRMZM2G428096
Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Variation: June 6th, 2017
Gene Model: June 6th, 2017
3 months agocat1 catalase1: electrophoretic mobility; cytosolic/glyoxysomal; tetrameric; intra/interlocus hybrid bands occur
5.03
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 months agosod4 superoxide dismutase4: electrophoretic mobility; cytosolic; Cu-Zn dimeric; intralocus hybrid bands occur; two similar sequences X17564 (sod4), X17565(sod4A)
1.04
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: February 12th, 2007
Variation: April 20th, 2005
3 months agocipk8 calcineurin B-like-interacting protein kinase8:
 
GRMZM2G383240
Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: June 2nd, 2017
Variation: June 2nd, 2017
Gene Model: June 2nd, 2017
3 months agogsr1 glutathione reductase1: single copy leaf cDNA csu111, similar to pea glutathione reductase
1.01
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: January 30th, 2015
3 months agouce4 ubiquitin conjugating enzyme4:
2.01
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: July 29th, 2004
3 months agocbl1 calcineurin B-like1:
 
GRMZM2G107575
Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
3 months agocbl9 calcineurin B-like9:
 
GRMZM2G015324
Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
3 months agoapx4 ascorbate peroxidase4:
 
GRMZM2G316256
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: June 5th, 2017
Gene Model: June 5th, 2017
3 months agoucp1 uncoupling protein1:
 
GRMZM5G852877
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Variation: June 5th, 2017
Gene Model: June 5th, 2017
3 months agoucp2 uncoupling protein2:
 
GRMZM2G165629
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Gene Model: June 5th, 2017
3 months agoznf3 zinc finger protein3:
 
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
3 months agoznf4 zinc finger protein4:
 
GRMZM2G048154
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
3 months agoznf5 zinc finger protein5:
 
GRMZM2G001205
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
3 months agoznf6 zinc finger protein6:
 
GRMZM5G804618
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
3 months agocbl4 calcineurin B-like2:
6.06
GRMZM2G001221
Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
3 months agompk3 MAP kinase3: transcript and protein activity upregulated by ABA and H2O2
1.03
GRMZM2G017792
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: July 9th, 2013
Variation: July 12th, 2013
Gene Model: July 9th, 2013
3 months agoucp3 uncoupling protein homolog3:
 
GRMZM2G000510
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Variation: June 5th, 2017
Gene Model: June 5th, 2017
3 months agoorc2 origin recognition complex2: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
GRMZM2G117238
Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Gene Model: June 3rd, 2017
Recommended by Marty Sachs:
March 7th, 2007
3 months agoorc4 origin recognition complex4: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
GRMZM5G876520
Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Gene Model: June 3rd, 2017
Recommended by Marty Sachs:
March 7th, 2007
3 months agocda1 cytidine deaminase1:
7.02
GRMZM2G082924
Xu, JH; Messing, J. 2006. BMC Genetics. 7:52     Reference: August 26th, 2008
Gene Product: August 26th, 2008
Variation: February 7th, 2009
Gene Model: June 3rd, 2017
3 months agocda2 cytidine deaminase2:
2.06
GRMZM2G008216
Xu, JH; Messing, J. 2006. BMC Genetics. 7:52     Reference: August 26th, 2008
Gene Product: August 26th, 2008
Variation: February 7th, 2009
Gene Model: June 3rd, 2017
3 months agohat1 histone acetyltransferase1: cDNA, genomic and peptide sequence; antibody cross-reactivity
7.02
GRMZM5G851405
Lusser, A et al. 1999. Nucl Acid Res 27:4427-4435     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: January 28th, 2009
Gene Model: June 3rd, 2017
3 months agomaf1 MFP1 attachment factor1: cDNA
 
GRMZM2G479245
Gindullis, F et al. 1999. Plant Cell 115:1755-1767     Reference: October 11th, 2010
Gene Product: September 1st, 2003
Gene Model: June 3rd, 2017
3 months agofcr1 ferric-chelate reductase (NADH)1: member of a multi-gene family
3.06
GRMZM2G133213
Bagnaresi, P et al. 1999. Biochem J 338:499-505     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 9th, 2008
Gene Model: June 3rd, 2017
3 months agohmt1 homocysteine S-methyltransferase 1:
 
   Ranocha, P et al. 2001. Plant J 25:575-584     Reference: September 1st, 2003
Gene Product: July 19th, 2004
Variation: June 3rd, 2017
3 months agoork1 outward rectifying potassium channel1:
4.05
GRMZM2G156255
Philippar, K, et al. 2003. J Biol Chem. 278:16973-81     Reference: July 14th, 2006
Gene Product: February 19th, 2008
Variation: February 19th, 2008
Gene Model: June 3rd, 2017
3 months agoorc3 origin recognition complex3: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
GRMZM2G381822
Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Variation: November 6th, 2010
Gene Model: June 2nd, 2017
Recommended by Marty Sachs:
March 7th, 2007
3 months agotel2 telomere maintenance2:
 
GRMZM2G144166
Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170     Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Gene Model: June 1st, 2017
3 months agodek38 defective kernel38: mutants are embryonic lethal, has a defective basal endosperm transfer (BETL) layer, and results in a smaller seed with highly underdeveloped endosperm.
 
GRMZM2G048851
Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170   At2g39910 (TAIR) Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Variation: May 2nd, 2017
Gene Model: May 2nd, 2017
3 months agotti1 tel2-interacting protein1:
 
GRMZM2G056403
Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170     Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Variation: June 1st, 2017
Gene Model: June 1st, 2017
3 months agoeng1 endo-1,3-1,4-beta-D-glucanase1: coleoptile enzyme, orthologous to rice enzyme; located in cell wall, IAA- stimulated coleoptile growth inhibited by antibody
4.05
GRMZM2G073079
Thomas, B et al. 1998. Plant Physiol 117: 1525     Reference: March 16th, 2006
Variation: May 20th, 2009
Gene Model: June 1st, 2017
Recommended by Ed Coe:
January 8th, 2008
3 months agorab30 responsive to abscisic acid30: cDNA and protein elicited by ABA
1.01
GRMZM2G472236
Burr, B et al. 1991. MNL 65:105-110     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: May 2nd, 2011
Gene Model: June 1st, 2017
3 months agomtl3 metallothionein3: cDNA highly expressed during microsporogenesis, one (or two) copies, high sequence homology with type 2 metallothionein.
4.05
GRMZM2G099340
Charbonnel-Campaa, L et al. 2000. Gene 254:199-208     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
3 months agohvp1 human viral protein homolog1: endosperm cDNA 5C02B04, similar to a virus transcription activator
9.02
GRMZM5G852396
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
3 months agosin1 sin homolog1: endosperm cDNA 5C01E06, similar to yeast SIN3
 
GRMZM2G319104
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
3 months agosmk2 small kernel2: mutants are recessive embryo-lethal small kernel
4.10
GRMZM2G023528
Yang, Y-Z, et al. 2017. Plant Physiol. 0:doi: 10.1104/pp.16.01295     Reference: June 1st, 2017
Gene Product: April 14th, 2017
Variation: April 14th, 2017
Gene Model: April 14th, 2017
3 months agoric1 ras-related protein RIC1:
 
GRMZM2G106960
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 12th, 2011
Gene Model: June 1st, 2017
3 months agoara3 ras-related protein ARA-3:
 
GRMZM2G061900
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 17th, 2011
Gene Model: June 1st, 2017
3 months agorgp2 ras-related protein RGP2:
 
GRMZM2G093186
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 17th, 2011
Gene Model: June 1st, 2017
3 months agosqsh1 squalene synthase homolog1: Designation as sqsh1 based on high homology to sqs1 sequence; existence of several cDNAs indicates a functional gene (EHC Jan 2011)
 
GRMZM2G029396
    Variation: January 27th, 2011
Gene Model: June 1st, 2017
3 months agocnh1 carbon-nitrogen hydrolase homolog1:
9.07
GRMZM2G169365
Guo, M; Rupe, M; Danilevskaya, O; Yang, X; Hut, ZH. 2003. Plant J. 36:30-44     Reference: November 12th, 2010
Variation: March 24th, 2011
Gene Model: June 1st, 2017
3 months agopsei5 cystatin5:
6.05
GRMZM2G024264
Massonneau, A; Condamine, P; Wisniewski, J; Zivy, M; Rogowsky, P. 2005. Biochim Biophys Acta. 1729:186-199     Reference: February 20th, 2009
Gene Product: April 21st, 2008
Variation: April 21st, 2008
Gene Model: June 1st, 2017
3 months agopsei10 cystatin10:
8.06
GRMZM2G030717
Massonneau, A; Condamine, P; Wisniewski, J; Zivy, M; Rogowsky, P. 2005. Biochim Biophys Acta. 1729:186-199     Reference: February 20th, 2009
Gene Product: April 21st, 2008
Variation: April 21st, 2008
Gene Model: June 1st, 2017
3 months agorpl44 ribosomal protein L44: vegetative meristem cDNA 7C02A07
7.03
GRMZM2G009412
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: January 24th, 2009
Gene Model: June 1st, 2017
3 months agobk2 brittle stalk2: brittle plant parts after 4-leaf stage
9.04 - 9.05
GRMZM2G109326
Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: March 6th, 2012
Variation: March 6th, 2012
Gene Model: March 5th, 2012
3 months agobt2 brittle endosperm2: like bt1; endosperm ADPG pyrophosphorylase subunit; with sh2 complements E. coli glgC
4.05
   Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: November 4th, 2014
Variation: November 12th, 2013
3 months agosh2 shrunken2: inflated, transparent, sweet kernels collapse on drying, becoming angular and brittle; endosperm ADPG pyrophosphorylase subunit (compare bt2); application: "supersweet" sweet corn - kernels sugar-sweet for long period
3.09
   Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: November 4th, 2014
Variation: October 10th, 2014
3 months agowx1 waxy1: amylopectin (stained red by iodine) replaces amylose (blue staining) in endosperm and pollen; extensive allelic series; application: highly branched starch has gelling properties, used for food gels, adhesives, and other industrial purposes; SSRs phi022, 027, 061NCBI: granule-bound starch synthase 1, chloroplastic/amyloplastic
9.03
   Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: June 4th, 2008
Variation: March 4th, 2017
3 months agomrp1 Myb related protein1: transforms aleurone cells into endosperm transfer cells and required to maintain transfer cell phenotype
8.05
   Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 months agosweet4c sugars will eventually be exported transporter4c: Mutants are defective in seed filling
5.04
GRMZM2G137954
Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763   LOC_Os02g19820 (MSU/TIGR) Reference: May 31st, 2017
Gene Product: November 4th, 2015
Variation: November 3rd, 2015
Gene Model: November 3rd, 2015
3 months agoubr1 ubiquitin receptor1: Orthologous to Arabidopsis DA1
 
GRMZM2G017845
Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: October 11th, 2012
Variation: October 11th, 2012
Gene Model: October 10th, 2012
3 months agolimtf4 LIM-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.05
GRMZM2G099328
Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763   AT4G36860 (TAIR) Reference: May 31st, 2017
Gene Product: May 31st, 2017
Variation: May 31st, 2017
Gene Model: May 31st, 2017
3 months agoAY103944  : similar to Arabidopsis poly(A) binding protein 8
2.04
GRMZM2G352129
    Variation: September 25th, 2007
Gene Model: May 30th, 2017
3 months agoAI714808  : similar to Arabidopsis protein phosphatase methylesterase 1
2.04
GRMZM2G005346
    Variation: July 29th, 2004
Gene Model: May 30th, 2017
3 months agoAW036917  :
6.05
GRMZM2G106218
    Variation: July 29th, 2004
Gene Model: May 30th, 2017
3 months agoereb94 AP2-EREBP-transcription factor 94: strongly expressed in the maize endosperm; might act as a key regulator of starch synthesis in maize (Li et al., 2017)
 
   Li, H et al. 2017. J Plant Physiol 216:11-16     Reference: May 29th, 2017
Variation: May 9th, 2017
3 months agomab27 math-btb27:
 
GRMZM2G161569
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 28th, 2017
Gene Model: February 14th, 2017
3 months agorap2 rap2.7 orthologue: negative regulator of flowering time; vgt1 acts as an enhancer (Salvi et al. 2007)
8.06
GRMZM2G700665
Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: February 27th, 2017
Gene Model: November 20th, 2012
3 months agopebp8 phosphatidylethanolamine-binding protein8: florigen activity: complements Arabidopsis FT mutants, promoting flowering at short days. Requires functional id1 gene.(Lazakis et al 2011)
 
GRMZM2G179264
Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: May 6th, 2011
Variation: June 19th, 2015
Gene Model: May 6th, 2011
3 months agod8 dwarf plant8: Dominant D8 plants resemble d1; extreme alleles not responsive to gibberellins.
1.09
GRMZM2G144744
Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: February 12th, 2007
Variation: August 29th, 2007
Gene Model: May 11th, 2011
3 months agozfl1 zea floricaula/leafy1: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
10.06
   Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: February 20th, 2007
3 months agozfl2 Zea floricaula leafy2: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
2.02
   Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: October 9th, 2014
3 months agodlf1 delayed flowering1: tall late plant with additional nodes and leaves at flowering; no apparent response to day length
 
   Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: February 6th, 2011
3 months agomads1 MADS1: transcripts detected in egg cells and invivo zygotes of maize, also expressed in synergids and antipodal cells. during flower development expressed in all ear spikelet organ primordia at intermediate stages
9.07
   Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: September 1st, 2003
Variation: April 15th, 2008
3 months agocca1 circadian clock associated1: myb transcription factor - clock gene
 
GRMZM2G014902
Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: July 31st, 2016
Variation: March 18th, 2011
Gene Model: July 30th, 2016
4 months agomab20 math-btb20:
 
GRMZM2G009724
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 26th, 2017
Gene Model: February 14th, 2017
4 months agocki4 cyclin-dependent kinase inhibitor4:
 
GRMZM2G358931
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 26th, 2017
Gene Model: March 7th, 2017
4 months agomab1 math-btb1:
 
AC195147.3_FG001
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 24th, 2017
Gene Model: February 13th, 2017
4 months agomab15 math-btb15:
 
GRMZM2G148213
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 24th, 2017
Gene Model: February 13th, 2017
4 months agosca1 short chain alcohol dehydrogenase1: single copy leaf cDNA, csu149, similar to ts2
5.00
GRMZM2G332976
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 1st, 2003
Variation: July 27th, 2013
Gene Model: June 23rd, 2015
4 months agoao3 aldehyde oxidase3: associated with ABA levels in silks of water-stressed plants (Setter et al 2011)
1.11
GRMZM2G019799
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: February 5th, 2013
Gene Model: February 5th, 2013
4 months agozep1 zeaxanthin epoxidase1:
2.04
GRMZM2G127139
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: August 29th, 2011
Gene Model: April 8th, 2013
4 months agolyce1 lycopene epsilon cyclase1: determines qualitative composition of endosperm carotenoids
8.05
GRMZM2G012966
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: October 3rd, 2011
Gene Model: October 3rd, 2011
4 months agolw1 lemon white1: white seedling, pale yellow endosperm; some alleles have zebra or luteus phenotypes
1.10
GRMZM2G027059
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: June 20th, 2012
Variation: March 10th, 2016
Gene Model: January 8th, 2014
4 months agops1 pink scutellum1: (aka vp7, lyc1, lycB) some alleles viviparous; endosperm and scutellum pink, seedling white with pink flush
5.04 - 5.04
   Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: March 30th, 2011
4 months agovp5 viviparous5: like vp2cDNA, strongest hybridization to this site; other sites are near o2, bnl17.25 and dup103; encodes a 2-step phytoene desaturase; SSR umc1070
1.02 - 1.02
   Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 13th, 2011
Variation: March 4th, 2014
4 months agovp9 viviparous9: (was y7, z1, zds1) like vp2; vp9-4889 dormant, pale aleurone, pale green seedling
7.02
GRMZM2G454952
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 13th, 2011
Variation: March 25th, 2017
Gene Model: March 8th, 2013
4 months agoaox1 alternative oxidase1: primers give PCR product closely similar to alternative oxidase in other species
2.02
AC233960.1_FG002
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: February 22nd, 2012
Variation: February 22nd, 2012
Gene Model: February 17th, 2012
4 months agocmk1 cytidine methyl kinase1: encodes 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [a.k.a. 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase]
3.06
GRMZM5G859195
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: October 9th, 2014
Gene Model: October 4th, 2014
4 months agonced3 nine-cis-epoxycarotenoid dioxygenase3:
 
GRMZM5G858784
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: September 20th, 2012
4 months agonced5 nine-cis-epoxycarotenoid dioxygenase5:
 
GRMZM2G417954
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Variation: September 1st, 2011
Gene Model: September 20th, 2012
4 months agodxs3 deoxy xylulose synthase3:
 
GRMZM2G173641
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: August 17th, 2004
Variation: February 15th, 2012
Gene Model: December 9th, 2011
4 months agohds1 hydroxymethylbutenyl diphosphate synthase1:
 
GRMZM2G137409
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: December 10th, 2011
4 months agoaox2 alternative oxidase2: primers give PCR product closely similar to alternative oxidase in other species
 
GRMZM2G125669
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: February 22nd, 2012
Variation: March 1st, 2012
Gene Model: February 17th, 2012
4 months agoccd8 carotenoid cleavage dioxygenase8: Mutants have mild branching, short stature, small ear size, and narrow-stalk
 
GRMZM2G446858
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Variation: September 21st, 2012
Gene Model: September 20th, 2012
4 months agocrti1 carotene isomerase1: enclodes carotene isomerase1
 
GRMZM2G108457
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
4 months agocrti2 carotene isomerase2: encodes carotene isomerase2
 
GRMZM2G106531
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
4 months agoggps1 geranylgeranyl pyrophosphate synthase1: part of multigene family encoding geranylgeranyl diphosphate synthase
 
AC194970.5_FG001
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
4 months agoggps2 geranylgeranyl pyrophosphate synthase2: part of multigene family encoding geranylgeranyl diphosphate synthase
 
GRMZM2G102550
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
4 months agoggps3 geranylgeranyl pyrophosphate synthase3: part of multigene family encoding geranylgeranyl diphosphate synthase
 
GRMZM2G102550
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
4 months agoippi1 isopentenyl pyrophosphate isomerase1: part of multigene family encoding isopentenyl pyrophosphate isomerase
 
GRMZM2G108285
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
4 months agoippi2 isopentenyl pyrophosphate isomerase2: part of multigene family encoding isopentenyl pyrophosphate isomerase
 
GRMZM2G145029
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
4 months agoggps4 geranylgeranyl pyrophosphate synthase4: part of multigene family encoding geranylgeranyl diphosphate synthase
 
GRMZM2G005909
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
4 months agocyp14 cytochrome P450 14: encodes CYP97C
 
GRMZM5G837869
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: June 3rd, 2015
Variation: June 3rd, 2015
Gene Model: April 8th, 2013
4 months agovde1 violaxanthin de-epoxidase1: Encodes violaxanthin de-epoxidase. Based on sequence similarity to Arabiodopsis gene.
 
GRMZM2G027219
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 13th, 2011
Gene Model: April 9th, 2013
4 months agocrti3 carotene isomerase3: enclodes carotene isomerase
 
GRMZM2G144273
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: September 29th, 2014
4 months agonced2 nine-cis-epoxycarotenoid dioxygenase2:
 
GRMZM2G407181
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
4 months agonced6 nine-cis-epoxycarotenoid dioxygenase6:
 
GRMZM2G110192
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
4 months agonced8 nine-cis-epoxycarotenoid dioxygenase8:
 
GRMZM2G150363
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
4 months agonced9 nine-cis-epoxycarotenoid dioxygenase9:
 
GRMZM5G838285
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
4 months agoccd7 carotenoid cleavage dioxygenase7:
 
GRMZM2G158657
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851   AT2G44990 (TAIR) Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
4 months agomecs1 methyl erythritol cyclodiphosphate synthase1:
 
GRMZM5G835542
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
4 months agomecs2 methyl erythritol cyclodiphosphate synthase2:
 
AC209374.4_FG002
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
4 months agomab24 math-btb24:
 
GRMZM2G103251
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
4 months agomab25 math-btb25:
 
GRMZM2G088086
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
4 months agomab26 math-btb26:
 
GRMZM2G161610
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
4 months agodxs1 deoxy xylulose synthase 1: leaf specific; function inferred from Medicago trunculata gene sequence and expression pattern (Walter 2002)
6.05
GRMZM2G137151
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: August 17th, 2004
Variation: June 20th, 2012
Gene Model: December 9th, 2011
4 months agodxs2 deoxy xylulose synthase 2: root specific; function inferred from sequence and expression pattern comparison with Medicago trunculata genes
9.03
GRMZM2G493395
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: August 17th, 2004
Variation: February 15th, 2012
Gene Model: December 9th, 2011
4 months agodxr1 deoxy xylulose reductoisomerase1: enzyme catalyzes the first committed step of the plastidial pathway to apocarotenoids during mycorrhizal establishment
3.04
GRMZM2G056975
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: May 11th, 2005
Gene Model: December 9th, 2011
4 months agoptac14 plastid transcriptionally active14: Ortholog of Arabidopsis PTAC14. Associates with Plastid Encoded RNA polymerase (PEP). Required for PEP-mediated transcription. (A. Barkan, 2015)ortholog of Arabidopsis PTAC14, a PEP-associated protein, required for PEP-mediated transcription; cpRNA defects in maize similar to other PEP-deficient mutants
 
GRMZM5G807767
Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Variation: May 21st, 2017
Gene Model: February 17th, 2015
4 months agoppr102 pentatricopeptide repeat102:
 
GRMZM2G012174
  At5g50280 (TAIR)
LOC_Os05g22870 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
4 months agoznfn1 zinc finger protein1:
 
GRMZM2G086277
  At5g52010 (TAIR)
LOC_Os06g07020 (MSU/TIGR)
Gene Product: April 4th, 2017
Gene Model: May 21st, 2017
4 months agoppr36 pentatricopeptide repeat36:
 
GRMZM2G333678
  AT4G19191 (TAIR)
LOC_Os11g14980 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
4 months agoppr61 pentatricopeptide repeat61:
 
GRMZM2G341479
  AT1G09220 (TAIR)
LOC_Os02g49830 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
4 months agopsa2 photosystemI2: thylakoid lumen protein with protein disulfided isomerase activity; mutants lack photosystem I core complex polypeptidesDnaJ-type zinc finger domain protein found in thylakoid lumen. Required for Photosystem I assembly. (A. Barkan, 2015)
 
GRMZM2G021687
Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524     Reference: May 20th, 2017
Gene Product: September 1st, 2003
Variation: September 18th, 2014
Gene Model: September 18th, 2014
4 months agopsa3 photosystemI3: Mutants have a pale green seedling phenotype; lacks photosystem I core complex polypeptides
 
GRMZM2G051403
Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524   AT3G55250 (TAIR) Reference: May 20th, 2017
Gene Product: May 20th, 2017
Variation: May 20th, 2017
Gene Model: May 20th, 2017
4 months agohcf148 high chlorophyll fluorescence148: Ortholog of Arabidopsis Y3IP1. PSI assembly factor, cooperates with Ycf3. (A. Barkan, 2015)mutants lack photosystem I, pale green seedling lethal; the Arabidopsis ortholog, Y3IP1, is a PSI assembly factor and cooperates with Ycf3
3.06
GRMZM2G002165
Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524     Reference: May 20th, 2017
Variation: December 30th, 2015
Gene Model: February 17th, 2015
4 months agopyg7 pale yellowgreen7: mutants are pale yellow green; encodes an assembly factor that interacts with PSA3
 
GRMZM5G809292
Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524   AT1G22700 (TAIR) Reference: May 20th, 2017
Gene Product: May 20th, 2017
Variation: May 20th, 2017
Gene Model: May 20th, 2017
4 months agoppr6 pentatricopeptide repeat6:
 
GRMZM2G093291
  At5g27270 (TAIR)
LOC_Os06g02120 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
4 months agoppr13 pentatricopeptide repeat13:
 
GRMZM2G099604
  At2g02980 (TAIR)
LOC_Os03g58100 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
4 months agoppr100 pentatricopeptide repeat100:
 
GRMZM2G428579
  At2g01860 (TAIR)
LOC_Os02g02590 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
4 months agoak2 ankyrin repeat protein2:
4.10
GRMZM2G019838
  At5g40160 (TAIR)
LOC_Os06g13000 (MSU/TIGR)
Variation: September 25th, 2007
Gene Model: May 20th, 2017
4 months agomab17 math-btb17:
 
GRMZM2G166049
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 17th, 2017
Gene Model: February 14th, 2017
4 months agocki2 cyclin-dependent kinase inhibitor2:
 
GRMZM2G037926
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 17th, 2017
Gene Model: March 7th, 2017
4 months agoumc1509  : NCBI: similar to Arabidopsis PATATIN-like protein 5
4.02
GRMZM2G154523
    Variation: May 16th, 2017
Gene Model: May 16th, 2017
4 months agostk3 serine-threonine kinase3: pollen-specific expression
 
GRMZM2G301647
Wang, H et al. 2017. Genome pp.doi: 10.1139/gen-2016-0089     Reference: January 9th, 2017
Gene Product: May 13th, 2014
Variation: May 16th, 2017
Gene Model: January 9th, 2017
4 months agochlh1 Mg chelatase subunit H 1:
 
GRMZM2G323024
Zoschke, R; Chotewutmontri, P; Barkan, A. 2017. Adv Frontiers Plant Sci. 8:385   AT5G13630 (TAIR)
LOC_Os03g20700 (MSU/TIGR)
Reference: May 15th, 2017
Gene Product: June 11th, 2007
Gene Model: May 15th, 2017
4 months agorpl16 (cp) 50S ribosomal protein L16 gene:
 
   Hammani, K et al. 2016. Nucl Acid Res 44:4278-4288     Reference: May 15th, 2017
Gene Product: September 1st, 2003
4 months agoppr103 pentatricopeptide repeat-containing protein103: required for the accumulation of plastid ribosomes
 
GRMZM2G170896
Hammani, K et al. 2016. Nucl Acid Res 44:4278-4288   AT5G03800 (TAIR) Reference: May 15th, 2017
Gene Product: December 27th, 2016
Variation: April 21st, 2016
Gene Model: April 21st, 2016
4 months agopin15 PIN-formed protein15: similar to rice OsPIN1b and OsPIN1d
 
GRMZM2G403601
Li, ZX et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12751   LOC_Os11g04190 (MSU/TIGR) Reference: May 13th, 2017
Gene Product: April 21st, 2014
Gene Model: May 13th, 2017
4 months agodmc1 disrupted meiotic cDNA homolog1:
 
GRMZM2G109618
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Variation: May 12th, 2017
Gene Model: January 27th, 2017
4 months agomab4 math-btb4:
 
GRMZM2G081441
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 12th, 2017
Gene Model: February 13th, 2017
4 months agopza03527  :
3.03
       Variation: May 11th, 2017
4 months agodbb1 double B-box zinc finger protein1:
2.04
GRMZM2G018876
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
4 months agomre11a meiotic recombination protein 11 homolog A:
 
GRMZM2G106056
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Variation: May 10th, 2017
Gene Model: January 27th, 2017
4 months agomab10 math-btb10:
 
GRMZM2G154437
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 13th, 2017
4 months agomab14 math-btb14:
 
GRMZM2G052985
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 13th, 2017
4 months agomab16 math-btb16:
 
GRMZM2G172210
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 14th, 2017
4 months agodbb2 double B-box zinc finger protein2:
 
GRMZM2G131982
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb3 double B-box zinc finger protein3: similar to Arabidopsis light-regulated zinc finger protein 1
 
GRMZM5G834596
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb5 double B-box zinc finger protein5:
 
GRMZM2G118884
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb7 double B-box zinc finger protein7:
 
GRMZM2G110541
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb8 double B-box zinc finger protein8:
 
GRMZM2G070446
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb9 double B-box zinc finger protein9:
 
GRMZM2G116475
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb10 double B-box zinc finger protein10:
 
GRMZM2G143718
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb11 double B-box zinc finger protein11:
 
GRMZM2G028594
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb12 double B-box zinc finger protein12:
 
GRMZM2G098442
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb6 double B-box zinc finger protein6:
5.05
GRMZM2G095299
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
4 months agodbb4 double B-box zinc finger protein4:
4.05
GRMZM2G019335
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
4 months agogcs1 generative cell specific1:
 
GRMZM2G412911
Moiseeva, YM et al. 2017. Russian Journal of Developmental Biology. 48:117-121   AT4G11720 (TAIR)
LOC_Os05g18730 (MSU/TIGR)
Reference: April 10th, 2017
Variation: May 9th, 2017
Gene Model: April 10th, 2017
4 months agodof21 C2C2-Dof-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.02
GRMZM2G162749
Peng, J et al. 2017. Frontiers Plant Sci 8:685     Reference: May 6th, 2017
Variation: January 6th, 2017
Gene Model: January 6th, 2017
4 months agocncr1 cinnamoyl CoA reductase1: Mutant results in plants with improved cell wall digestibility
1.07
GRMZM2G131205
Smith, RA et al. 2017. Biotechnol Biofuels. 10:109     Reference: May 5th, 2017
Gene Product: September 1st, 2003
Variation: May 5th, 2017
Gene Model: June 23rd, 2016
4 months agomab7 math-btb7:
 
GRMZM2G110531
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 13th, 2017
4 months agomab18 math-btb18:
 
GRMZM2G060765
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 14th, 2017
4 months agomab30 math-btb30:
 
GRMZM2G319215
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 14th, 2017
4 months agocki3 cyclin-dependent kinase inhibitor3:
 
GRMZM2G157510
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 4th, 2017
Gene Model: March 7th, 2017
4 months agomac1 multiple archesporial cells1: (was lar*-487) several archesporial cells undergo normal meiosis; plants partially female sterile but completely male sterileBeware: this locus could accidentally be confused with the act1 (actin 1) locus, which also was called MAc1 in past publications!
10.03
GRMZM2G027522
Wang, C-J, et al. 2012. Development. 139:2594-2603     Reference: May 2nd, 2017
Gene Product: August 2nd, 2012
Variation: August 10th, 2012
Gene Model: July 26th, 2012
Recommended by Chung-Ju Rachel Wang:
December 19th, 2013
4 months agosm1 salmon silks1: silks salmon color with P1-rr and P1-wr, brown with P1-ww
6.05 - 6.05
GRMZM2G031311
Casas, MI et al. 2016. Plant Cell 28:1297-1309     Reference: May 1st, 2017
Gene Product: May 26th, 2016
Variation: May 26th, 2016
Gene Model: May 26th, 2016
4 months agoprh17 protein phosphatase homolog17: responds to Pi starvation
 
GRMZM2G164352
Wang, J et al. 2017. PLoS One 12:e0176538     Reference: April 28th, 2017
Gene Product: September 1st, 2003
Variation: April 28th, 2017
Gene Model: April 28th, 2017
4 months agorca1 RUBISCO activase1: single copy leaf cDNA csu901 smilar to RUBISCO activaseencodes the beta form of RUBISCO activase
4.00
GRMZM2G162282
Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Gene Product: October 28th, 2014
Variation: September 1st, 2003
Gene Model: February 11th, 2014
4 months agokn1 knotted1: dominant Kn1 plants have localized proliferation of tissue at vascular bundles on leaf
1.10
   Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Variation: December 6th, 2013
4 months agonip1a NOD26-like membrane intrinsic protein1: leaf cDNA csu177 similar to rice nodulin
5.04
GRMZM2G041980
Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Gene Product: September 1st, 2003
Variation: June 2nd, 2015
Gene Model: June 2nd, 2015
4 months agonod1 narrow odd dwarf1: mutants are small plants with narrow leaves
 
GRMZM2G027821
Rosa, M et al. 2017. Plant Cell 29:474-490   AT4G35920 (TAIR)
LOC_Os03g06120 (MSU/TIGR)
Reference: April 27th, 2017
Gene Product: March 4th, 2017
Variation: March 4th, 2017
Gene Model: March 4th, 2017
5 months agobnl10.13a  : NCBI: probable serine/threonine-protein kinase PIX13
10.05
GRMZM2G142832
Matz, EC et al. 1992. MNL 66:107     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
5 months agohb91 Homeobox-transcription factor 91: Tests with B-A translocations indicated that this probe did not map to chromosomes 4L or 6L.NCBI: Homeodomain leucine zipper family IV proteinLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
10.07
GRMZM2G122897
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 1st, 2003
Variation: April 25th, 2017
Gene Model: April 25th, 2017
5 months agonpi285a(cac)  :
10.02
GRMZM2G350841
Hulbert, SH and Bennetzen, JL. 1991. Mol Gen Genet 226:377-382     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
5 months agoumc130  :
10.03
GRMZM2G125931
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 25th, 2017
Gene Model: April 25th, 2017
5 months agoumc259a  :
10.05
AC233888.1_FG001
    Variation: April 25th, 2017
Gene Model: April 25th, 2017
5 months agotps23 terpene synthase23: part of defense response to herbivory by western maize rootworm and Spodoptera littoralis but not expressed highly in most North American maize
10.03
GRMZM2G127336
Tamiru, A et al. 2017. Ecology and Evolution. 7:2835-2845     Reference: April 22nd, 2017
Gene Product: July 21st, 2008
Variation: March 21st, 2017
Gene Model: August 22nd, 2012
5 months agoumc95  : NCBI: Putative calmodulin-binding family protein
9.05
GRMZM5G880028
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 21st, 2017
Gene Model: April 21st, 2017
5 months agonta1 N-terminal amidase1: NCBI: CemA-like proton extrusion protein-related
9.08
GRMZM2G110258
Anderson, L, et al. 2004. Genetics. 166:1923-1933   At4g34090 (TAIR)
LOC_Os03g01920 (MSU/TIGR)
Reference: February 12th, 2011
Variation: April 21st, 2017
Gene Model: April 21st, 2017
5 months agoasg12a  : genomic clone, single copyNCBI: putative glycosyl hydrolase family 10 protein
9.07
GRMZM2G048375
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 21st, 2017
Gene Model: April 21st, 2017
5 months agocsu634  : protein phosphatase 2C-like (Alexandrov et al.)
9.05
GRMZM2G006429
    Variation: April 20th, 2017
Gene Model: April 20th, 2017
5 months agonpi414a  : similar to Arabidopsis NADH dehydrogenase
8.08
GRMZM2G069260
Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Variation: April 19th, 2017
Gene Model: April 19th, 2017
5 months agocsu31a  : partially sequenced cDNA to leaf mRNANCBI: Tat pathway signal sequence
8.06
GRMZM2G154508
Heredia-Diaz, O et al. 1994. MNL 68:30-34     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 19th, 2017
5 months agoagrr21  : NCBI: protein CURVATURE THYLAKOID 1C, chloroplastic
8.09
GRMZM2G302639
Armstrong, CL et al. 1992. Theor Appl Genet 84:755-762     Reference: September 1st, 2003
Variation: September 25th, 2007
Gene Model: April 19th, 2017
5 months agosi606065d12  :
1.03
GRMZM2G149481
    Gene Product: April 19th, 2017
Gene Model: April 19th, 2017
5 months agoatl1 auxin transporter-like1: mutant tassels have reduced branch numbers; bald tip on ears with fewer spikelets per row, and agravitropic root growth
 
GRMZM2G128918
Huang, P et al. 2017. Nature Plants 3:17054   AT2G38120 (TAIR)
LOC_Os01g63770 (MSU/TIGR)
Reference: April 19th, 2017
Gene Product: April 19th, 2017
Variation: April 19th, 2017
Gene Model: March 12th, 2015
5 months agorip1 ribosome-inactivating protein1: electrophoretic mobility, seed-specific, abundant 32kD endosperm protein (b32 protein), cytosolic, inactivates rabbit (not maize or wheat) ribosomes; cDNA ZmRIP3, SSR phi014, phi060, umc1202
8.03
GRMZM2G063536
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: April 19th, 2005
Gene Model: April 18th, 2017
5 months agocsu454(gst)  :
1.01
GRMZM2G096247
    Gene Product: September 1st, 2003
Variation: August 9th, 2010
Gene Model: April 18th, 2017
5 months agoumc1149  : NCBI: Glutathione S-transferase family
8.06
GRMZM2G105005
    Gene Product: September 1st, 2003
Variation: April 18th, 2017
Gene Model: April 18th, 2017
5 months agorop7 Rho-related protein from plants 7: cDNA, plasma membrane targeting, SSR umc1950In Maize Genetics Conference Abstracts rop7 was called rop1. These abstracts are indeed discussing rop7.
8.05
AC209819.3_FG012
Christensen, T, et al. 2003. Plant Physiol. 133:1791-1808     Reference: March 26th, 2004
Gene Product: April 1st, 2004
Variation: April 18th, 2017
Gene Model: January 1st, 2015
5 months agogst9 glutathione transferase9:
9.07
GRMZM2G126763
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
5 months agogst15 glutathione transferase15:
8.05
GRMZM2G150474
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: April 18th, 2017
5 months agogst17 glutathione transferase17:
5.05
GRMZM2G064255
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: April 18th, 2017
5 months agogst21 glutathione transferase21:
3.05
GRMZM2G428168
McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: August 18th, 2010
Gene Model: April 18th, 2017
5 months agogst22 glutathione transferase22:
10.04
GRMZM2G330635
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 18th, 2010
Gene Model: April 18th, 2017
5 months agogst26 glutathione transferase26:
4.05
GRMZM2G363540
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
5 months agogst34 glutathione transferase34:
 
GRMZM2G149182
McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
5 months agoumc1457  : NCBI: universal stress protein family
8.03
GRMZM5G887068
    Variation: April 14th, 2017
Gene Model: April 14th, 2017
5 months agoumc124a(chk)  : "NCBI: choline/ethanolamine kinase; putative choline kinase 2"
8.03
GRMZM2G087146
Senior, ML et al. 1996. MNL 70:50-54     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 14th, 2017
Gene Model: April 14th, 2017
5 months agosxd1 sucrose export defective1: vitamin E synthesis; anthocyanin accumulates in a non-clonal pattern at tip and margins of leaves soon after emergence from whorl; reduced plant height
5.04
   Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: December 1st, 2012
Variation: August 7th, 2012
5 months agosut3 sucrose transporter3:
1.08
GRMZM2G083248
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
5 months agotdy1 tie-dyed1: Leaf blades develop variegated chlorotic and green regions; chlorotic regions hyperaccumulate carbohydrates.(Braun 2008)
6.07
GRMZM2G321778
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Variation: September 14th, 2011
Gene Model: July 14th, 2011
5 months agotdy2 tie-dyed2: leaves yellow in patches simulating tie-dyed or zebra patterns
 
GRMZM5G840560
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 5th, 2012
Variation: September 4th, 2012
Gene Model: September 4th, 2012
5 months agosut4 sucrose transporter4:
5.09
GRMZM2G145107
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: February 17th, 2017
Gene Model: April 17th, 2013
5 months agosut5 sucrose transporter5:
 
GRMZM2G081589
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
5 months agosut6 sucrose transporter6:
 
GRMZM2G106741
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
5 months agosut7 sucrose transporter7: single copy cDNA; transcripts observed in mature leaf blades of young plants, and at reproductive stage in various tissues including leaf sheaths, culms, husks, pedicels, with little transcript detected in silks and developing kernels.
9.07
GRMZM2G087901
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: April 17th, 2013
5 months agocps5 chloroplast protein synthesis5: NCBI: putative leucine--tRNA ligase, mitochondrialChloroplast protein synthesis 5: chloroplast leucyl-tRNA synthetase (A. Barkan, 2015)
8.02
GRMZM5G858471
Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 12th, 2017
5 months agorpl40 50S ribosomal protein L40: npi220b was called npi553 but is listed in the database as npi220b
8.01
GRMZM2G157007
Sisco, PH. 1991. Crop Sci 31:1263-1266     Reference: September 1st, 2003
Variation: April 12th, 2017
Gene Model: April 12th, 2017
5 months agomyb23 MYB-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: April 11th, 2017
5 months agoumc168  : NCBI: similar to Arabidopsis aldehyde dehydrogenase 22A1
7.06
GRMZM2G135341
Senior, ML et al. 1996. MNL 70:50-54     Reference: September 1st, 2003
Variation: April 11th, 2017
Gene Model: April 11th, 2017
5 months agoafd1 absence of first division1: male and female sterility; early meiosis
6.07
GRMZM2G059037
Ren, J et al. 2017. Theor Appl Genet pp.doi: 10.1007/s00122-017-2892-6   AT5G05490 (TAIR)
LOC_Os05g50410 (MSU/TIGR)
LOC_Os05g50410 (Gramene)
Reference: April 10th, 2017
Gene Product: July 30th, 2009
Variation: August 11th, 2011
Gene Model: July 14th, 2011
5 months agofdr1 first division restitution1: confers high anther fertility in haploids
 
   Ren, J et al. 2017. Theor Appl Genet pp.doi: 10.1007/s00122-017-2892-6     Reference: April 10th, 2017
Variation: September 6th, 2013
5 months agohb48 Homeobox-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tsuda, K et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00967     Reference: April 7th, 2017
Variation: April 7th, 2017
5 months agohb76 Homeobox-transcription factor 76: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tsuda, K et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00967     Reference: April 7th, 2017
Variation: April 7th, 2017
5 months agoumc1710  : NCBI: similar to Arabidopsis PLAC8 family protein
7.04
GRMZM2G008687
    Variation: April 7th, 2017
Gene Model: April 7th, 2017
5 months agoasg34a(msd)  :
7.02
GRMZM2G054267
Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 7th, 2017
5 months agoasg49  : NCBI: Pentatricopeptide repeat-containing protein
7.03
GRMZM2G003869
Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Variation: April 7th, 2017
Gene Model: April 7th, 2017
5 months agolg1 liguleless1: In the liguleless1 mutant, ligule and auricle are missing; leaves are upright
2.01
   Li, CX et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12739     Reference: April 6th, 2017
Gene Product: December 18th, 2014
Variation: November 8th, 2007
5 months agonpi393  :
6.03
GRMZM2G158668
Stuber, CW et al. 1992. Genetics 132:823-839     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 6th, 2017
5 months agoumc132a(chk)  : NCBI: putative choline kinase 2
6.07
GRMZM2G014303
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 6th, 2017
Gene Model: April 6th, 2017
5 months agoumc21  : NCBI: Protein-tyrosine-phosphatase IBR5
6.05
GRMZM2G174170
Rocheford, TR. 1994. Proc Annu Corn Sorghum Ind Res Conf 49:239-249     Reference: September 1st, 2003
Variation: April 6th, 2017
Gene Model: April 6th, 2017
5 months agoumc59a  : NPI linkage catalog of 1/25/91 places this probe on chromosome 7.NCBI: WAT1-related protein
6.02
GRMZM2G134930
Beavis, WD et al. 1991. Theor Appl Genet 83:141-145     Reference: September 1st, 2003
Variation: April 5th, 2017
Gene Model: April 5th, 2017
5 months agoln1 linoleic acid1: lower ratio of oleate to linoleate in kernelembryo oil content and composition,cloned by chromosome walk to high oil QTL; maybe allele of ln1 (Zheng 2008)
6.04 - 6.04
GRMZM2G169089
Karn, A et al. 2017. G3 7:1157-1164     Reference: April 4th, 2017
Gene Product: July 22nd, 2008
Variation: August 16th, 2014
Gene Model: August 15th, 2014
5 months agopsa1 photosystemI1: Required for PSI accumulation. Harbors NifU domain implicated in Fe-S cluster assembly. Ortholog of Arabidopsis Nfu-IVa. (A. Barkan, 2015)lacks photosystem I core complex polypeptides; harbors NifU domain implicated in Fe-S cluster assemblyNCBI: NFU3 NifU-like protein 3
6.02
GRMZM2G100976
Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Variation: April 4th, 2017
Gene Model: April 4th, 2017
5 months agozfp30 putative zinc finger protein30:
4.09
GRMZM2G116079
    Gene Product: April 4th, 2017
Variation: May 19th, 2015
Gene Model: May 19th, 2015
5 months agoznf2 Zinc finger nuclease2: located between sh1 and bz1 (Hawkins et al., 2014)
9.01
GRMZM2G478553
Hawkins, JS et al. 2014. Plant J 79:375-384     Reference: September 25th, 2015
Gene Product: April 4th, 2017
Variation: September 25th, 2015
Gene Model: September 25th, 2015
5 months agorzfl1 RING zinc finger protein-like1:
9.06
   Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194     Reference: January 11th, 2009
Gene Product: April 4th, 2017
Variation: September 25th, 2007
5 months agotsh1 tassel sheath1: leaves develop at base of tassel branches and spikelet pairstsh1 was positionally cloned by Whipple et al, 2010. It was initially mapped between umc2059 and bnlg1740. The position was narrowed using a larger population, synteny with rice provided two candidate genes, one was selected based on sequencing differences from progenitors for three independent EMS alleles.
6.07
   Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: April 4th, 2017
Variation: October 6th, 2011
5 months agorhcp1 ring hc protein1: expressed during brace root initiation and regulated by abiotic stresses.
 
GRMZM2G024690
Li, W-L et al. 2017. J Integrative Agric 16: 60345-60347     Reference: April 3rd, 2017
Gene Product: April 4th, 2017
Variation: April 3rd, 2017
Gene Model: April 3rd, 2017
5 months agotan1 tangled1: (was py1) leaves short, pointed, fine white streaks; displays abnormally oriented cell divisions and altered growth and development throughout the plant
6.05
   Martinez, P; Luo, A; Sylvester, AW; Rasmussen, CG. 2017. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.1619252114     Reference: April 2nd, 2017
Variation: June 29th, 2005
5 months agorgh3 rough endosperm3: Mature rgh3 seeds show a rough, etched, or pitted endosperm surface as well as a reduced seed size
 
GRMZM5G849788
Gault, CM, et al. 2017. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.1616173114     Reference: April 2nd, 2017
Gene Product: December 29th, 2011
Variation: December 29th, 2011
Gene Model: April 29th, 2013
5 months agohct5 hydroxycinnamoyltransferase5: up-regulated in the Rp1-D21 mutant lines
2.04
GRMZM2G158083
Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: November 7th, 2015
Gene Model: November 7th, 2015
5 months agocesa9 cellulose synthase9: cDNA
2.06
   Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: October 7th, 2016
Variation: January 3rd, 2014
5 months agocesa13 cellulose synthase13: NCBI: cellulose synthase A catalytic subunit 4 [UDP-forming]-like
 
GRMZM2G037413
Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: October 7th, 2016
Gene Model: April 1st, 2017
5 months agocml1 coumarate ligase1:
5.04
GRMZM2G075333
Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: April 1st, 2017
Gene Model: June 23rd, 2016
5 months agodek10 defective kernel10: collapsed endosperm; lethal; cultured embryos green, curled, stubby; encodes a E-subgroup PPR protein
4.06 - 4.11
GRMZM2G087226
Qi, WW et al. 2017. Genetics 205:1489-1501     Reference: March 31st, 2017
Gene Product: December 27th, 2016
Variation: February 20th, 2017
Gene Model: February 20th, 2017
5 months agomybr51 MYB-related-transcription factor 51:
5.09
GRMZM2G379167
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: March 31st, 2017
5 months agocol12 2C2-CO-like-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: zinc finger protein CONSTANS-LIKE 16
5.07
GRMZM2G041991
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 1st, 2003
Variation: March 31st, 2017
Gene Model: March 31st, 2017
5 months agogrf9 growth-regulating factor9: NCBI: growth-regulating factor 9-like
5.08 - 5.08
GRMZM5G893117
Zhang, D et al. 2008. Plant Sci 175:809-817     Reference: July 6th, 2015
Variation: March 30th, 2017
Gene Model: March 30th, 2017
5 months agoumc126a  : NCBI: probable WRKY transcription factor 51
5.06
   Sachs, MM pp.87-102 in Basra, AS. 1994.Harwood Academic Publishers     Reference: September 1st, 2003
Variation: March 30th, 2017
5 months agod11 dwarf11: dominant mutant that appears to inhibit GA biosynthesis.
 
   Wang, YJ et al. 2017. Plant Mol Biol Rep pp.DOI: 10.1007/s11105-017-1028-0     Reference: March 30th, 2017
Variation: June 18th, 2013
5 months agoumc1482  : NCBI: NF-180
5.04
GRMZM2G037865
    Variation: September 1st, 2003
Gene Model: March 29th, 2017
5 months agoemp17 empty pericarp17: mutants abolish the C-to-U editing of ccmB-43 and rps4-335 sites in mitochondria
 
AC212684.3_FG012
Yang, Y-Z et al. 2017. New Phytol pp.doi: 10.1111/nph.14424     Reference: January 26th, 2017
Gene Product: December 27th, 2016
Variation: March 28th, 2017
Gene Model: January 26th, 2017
5 months agoemp10 empty pericarp10: mutant effects the cis-splicing of nad2 intron 1 and seed development
 
GRMZM2G078416
Cai, MJ et al. 2017. Plant J pp.doi: 10.1111/tpj.13551     Reference: March 28th, 2017
Gene Product: December 27th, 2016
Variation: March 28th, 2017
Gene Model: March 28th, 2017
6 months agorz474a(dnaj)  : NCBI: putative dnaJ chaperone family protein
5.03
GRMZM2G134980
    Variation: March 24th, 2017
Gene Model: March 24th, 2017

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