SSR Data in MaizeGDB

SSR Research Tools


Simple SSR Search: A popup window providing assistance with SSR searches This search form allows you to just enter basic name or repeat info to quickly retrieve the desired SSR. Use % as a wild card. If you are having difficulties, click on the green question-mark box. A sample search is provided to help you.


(see a sample SSR query)

    (upper limit on results is 2,000 records)

This search can be executed on every page on the site by utilizing the form in the upper right corner. Choose "SSR" from the drop-down menu, enter your search term in the field, and hit return to find the SSR you're looking for.


Mapped SSRs: This utility displays the map locations of the SSRs in MaizeGDB. You can obtain this information by chromosome (1-10, below).
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10


Mapped SSRs: (Detail) This utility displays the map locations of the SSRs in MaizeGDB. This table is sorted by Map and Map Coordinate. Includes Amplicon Length and Sequence Preview columns. You can obtain this information by chromosome (1-10, below).
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10


Complete List of SSR Repeats: Provides a complete list of SSR repeats available in MaizeGDB, linked to their respective full SSR records.
SSRs Derived From Genes: An up-to-date listing of SSRs and the genes from which they are derived, formatted in an easily-downloadable table.


You might also be interested in visually browsing our gel patterns.



You may also be interested in SSR protocols from the Maize Mapping Project.


Discussion of SSR Data for the General Public


There is no description for this available right now.
This section will be updated soon!