MaizeGDB is a community-oriented, long-term, federally funded
informatics service to researchers focused on the crop plant and
model organism Zea mays.
MaizeGDB is a founding member of
AgBioData,
a consortuim of agriculture-related online resources which is
committed to making agriculture-related research data FAIR.
TYPSimSelector: A tool that sorts identity-by-state values derived from SNP datasets for accessions in the Ames Diversity Panel (a USDA-maintained set of maize lines representing wide genetic variation in Ames, Iowa).
GCV: A web-app that visualizes genomic context data in a single, federated interface by using functional annotations as a unit of search and comparison.
Chromosome-level genome assembly of a regenerable maize inbred line A188.
Guifang Lin, Cheng He, Yan Liu, Ha Le, Tej Man Tamang, Huakun Zheng, Mingxia Zhao, Dal-Hoe Koo, Yangfan Hao, Yunjun Liu, Frank McFarland, Heidi Kaeppler, Shawn Kaeppler, Myeong-Je Cho, Hairong Wei, Sunghun Park, Frank White, Jun Zheng, Guoying Wang, Sanzhen Liu
PMID DOI
Guifang Lin, Cheng He, Yan Liu, Ha Le, Tej Man Tamang, Huakun Zheng, Mingxia Zhao, Yangfan Hao, Yunjun Liu, Myeong-Je Cho, Hairong Wei, Sunghun Park, Frank White, Jun Zheng, Guoying Wang, Sanzhen Liu
Assembly provider
Kansas State University
Sequencing description
Sequencing technologies: Nanopore long read sequencing Sequencing method: Nanopore long read sequencing Genome coverage: 90x
Assembly description
Assembly methods: Canu long read assembly Construction of pseudomolecules: yes
A contig is a contiguous consensus sequence that is
derived from a collection of overlapping reads.
A scaffold is set of a ordered and orientated contigs
that are linked to one another by mate pairs of sequencing reads.
