Newly Characterized Genes

CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

MaizeGDB prefers not to assign formal gene names to gene models based purely on orthology. Known difficulties include inclusivity (there are over 10,000 functionally characterized Arabidopsis genes)* and some likelihood of errors in inferred functions. Unlike gene models, gene names are generally conserved unless differently named genes are found to be allelic. Of particular note, naming priveleges are customarily held by researchers who first confirm function.

We encourage researchers to use the annotation tool on the MaizeGDB gene model pages to add their insights about putative function, especially when not currently part of the Phytozome or Gramene pipelines.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The updates are made around 4:00am CST.


         Recommended Genes


One month | Six months | One year | All time

New or updated genes since one month ago. The cutoff date is January 19th, 2018.

Last UpdateGeneFull Name : DescriptionChromosome
or Bin
Gene
Model
Recent ReferenceOrthologsUpdate information
2 days agomac1 multiple archesporial cells1: (was lar*-487) several archesporial cells undergo normal meiosis; plants partially female sterile but completely male sterileBeware: this locus could accidentally be confused with the act1 (actin 1) locus, which also was called MAc1 in past publications!
10.03
GRMZM2G027522
van der Linde, K et al. 2018. Plant Cell pp.doi: 10.1105/tpc.17.00238     Reference: February 17th, 2018
Gene Product: August 2nd, 2012
Variation: August 10th, 2012
Gene Model: July 26th, 2012
Recommended by Chung-Ju Rachel Wang:
December 19th, 2013
2 days agoltk1 leucine-rich transmembrane protein kinase1: endosperm cDNA, multiple copy; one copy is near pds1
1.02
GRMZM2G153393
Li, Z et al. 1997. Maize Genetics Conference Abstracts 39     Reference: September 1st, 2003
Gene Product: February 17th, 2018
Variation: September 1st, 2003
Gene Model: July 28th, 2016
2 days agoereb197 AP2-EREBP-transcription factor 197: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
GRMZM2G174784
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: February 17th, 2018
2 days agoltk2 leucine-rich transmembrane protein kinase2: belongs to a small gene family; ltk2 shares 98.6% nucleotide sequence homology with ltk3, and these genes could be products of a recent gene duplication located on chromosome 9L.
9.07
GRMZM2G330907
Li, ZH and Wurtzel, E. 1998. Plant Mol Biol 37:749-761     Reference: September 1st, 2003
Gene Product: February 17th, 2018
Variation: January 10th, 2013
Gene Model: December 27th, 2016
2 days agosweet13b sugars will eventually be exported transporter13b:
 
GRMZM2G021706
Bezrutczyk, M et al. 2018. New Phytol pp.doi: 10.1111/nph.15021     Reference: February 17th, 2018
Gene Product: November 4th, 2015
Variation: February 17th, 2018
Gene Model: November 3rd, 2015
2 days agosweet13c sugars will eventually be exported transporter13c:
 
GRMZM2G179349
Bezrutczyk, M et al. 2018. New Phytol pp.doi: 10.1111/nph.15021     Reference: February 17th, 2018
Gene Product: November 4th, 2015
Variation: February 17th, 2018
Gene Model: November 3rd, 2015
2 days agomsp1 multiple sporocyte1: A conserved ligand-receptor pair with mac1
 
GRMZM2G447447
van der Linde, K et al. 2018. Plant Cell pp.doi: 10.1105/tpc.17.00238   AT5G07280 (TAIR)
LOC_Os01g68870 (MSU/TIGR)
Reference: February 17th, 2018
Gene Product: February 17th, 2018
Gene Model: February 17th, 2018
2 days agomsp2 multiple sporocyte2: A conserved ligand-receptor pair with mac1
 
GRMZM2G306771
van der Linde, K et al. 2018. Plant Cell pp.doi: 10.1105/tpc.17.00238   AT5G07280 (TAIR)
LOC_Os01g68870 (MSU/TIGR)
Reference: February 17th, 2018
Gene Product: February 17th, 2018
Gene Model: February 17th, 2018
2 days agomsp3 multiple sporocyte3: A conserved ligand-receptor pair with mac1
 
GRMZM2G107484
van der Linde, K et al. 2018. Plant Cell pp.doi: 10.1105/tpc.17.00238   AT5G07280 (TAIR)
LOC_Os01g68870 (MSU/TIGR)
Reference: February 17th, 2018
Gene Product: February 17th, 2018
Gene Model: February 17th, 2018
2 days agosweet13a sugars will eventually be exported transporter13a:
10.03
GRMZM2G173669
Bezrutczyk, M et al. 2018. New Phytol pp.doi: 10.1111/nph.15021     Reference: February 17th, 2018
Gene Product: November 4th, 2015
Variation: February 17th, 2018
Gene Model: December 28th, 2017
3 days agobzip40 bZIP-transcription factor 40: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.06
AC203957.3_FG004
Perduns, R et al. 2015. Plant Physiol 168:1378-1388     Reference: October 26th, 2015
Variation: September 1st, 2003
Gene Model: February 16th, 2018
3 days agoumc1108  :
2.06
GRMZM2G123972
    Variation: September 1st, 2003
Gene Model: February 16th, 2018
3 days agoumc1252  :
2.09
GRMZM2G023585
    Variation: February 16th, 2018
Gene Model: February 16th, 2018
3 days agoplatz5 PLATZ-transcription factor 5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
GRMZM2G131280
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: February 16th, 2018
Gene Model: February 16th, 2018
3 days agogeb1 glucan endo-1,3-beta-glucosidase homolog1: cDNA sequence homologous to 1,3-beta glucanase, possibly single copy
3.05
GRMZM2G065585
Li, XH et al. 2018. Frontiers Plant Sci 9:65     Reference: February 16th, 2018
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: October 30th, 2015
4 days agoabc4 aberrant chloroplast development4: member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
1.02
GRMZM2G097283
Hunter, CT, III et al. 2018. Plant J 93:799-813   At1g60600 (TAIR) Reference: February 15th, 2018
Gene Product: January 8th, 2018
Gene Model: January 8th, 2018
4 days agow3 white seedling3: like vp2; w3-8686 pale endosperm, pale green seedling in dim light
2.08 - 2.07
GRMZM2G113476
Hunter, CT, III et al. 2018. Plant J 93:799-813   AT3G11945 (TAIR) Reference: February 15th, 2018
Gene Product: January 8th, 2018
Variation: January 8th, 2018
Gene Model: January 8th, 2018
4 days agoumc1004  :
2.06
GRMZM2G098076
    Variation: September 1st, 2003
Gene Model: February 15th, 2018
4 days agonactf36 NAC-transcription factor 36: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.04
GRMZM2G081930
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: February 15th, 2018
4 days agoumc1028  :
2.05
GRMZM2G115658
    Variation: September 1st, 2003
Gene Model: February 15th, 2018
4 days agohggt1 homogentisate geranylgeranyl transferase1: vitamin E synthesis; contributes to variation in levels of tocotrienol (Lipka et al 2013)member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
 
GRMZM2G173358
Hunter, CT, III et al. 2018. Plant J 93:799-813     Reference: February 15th, 2018
Gene Product: January 8th, 2018
Gene Model: June 26th, 2013
4 days agohpt1 homogentisate phytyltransferase1: member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
 
GRMZM2G048472
Hunter, CT, III et al. 2018. Plant J 93:799-813     Reference: February 15th, 2018
Gene Product: January 8th, 2018
Gene Model: January 8th, 2018
4 days agohggt3 homogentisate geranylgeranyltransferase3: member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
 
GRMZM5G848876
Hunter, CT, III et al. 2018. Plant J 93:799-813     Reference: February 15th, 2018
Gene Product: January 8th, 2018
Gene Model: January 8th, 2018
4 days agohggt2 homogentisate geranylgeranyltransferase3: member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
 
GRMZM2G410644
Hunter, CT, III et al. 2018. Plant J 93:799-813     Reference: February 15th, 2018
Gene Product: January 8th, 2018
Gene Model: January 8th, 2018
4 days agochlg1 chlorophyll synthase G1: member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
 
GRMZM2G162672
Hunter, CT, III et al. 2018. Plant J 93:799-813     Reference: February 15th, 2018
Gene Product: January 8th, 2018
Gene Model: January 8th, 2018
4 days agocox10a cytochrome c oxidase subunit10a: member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
 
GRMZM2G178859
Hunter, CT, III et al. 2018. Plant J 93:799-813     Reference: February 15th, 2018
Gene Product: September 1st, 2003
Gene Model: January 8th, 2018
4 days agocox10b cytochrome c oxidase subunit10b: member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
 
GRMZM2G162776
Hunter, CT, III et al. 2018. Plant J 93:799-813     Reference: February 15th, 2018
Gene Product: September 1st, 2003
Gene Model: January 8th, 2018
4 days agophpt1 para-hydroxybenzoate-polyprenyltransferase1: member of the ubiquitinA (UbiA) prenyltransferase domain containing gene family (Hunter et al., 2018)
 
GRMZM2G048472
Hunter, CT, III et al. 2018. Plant J 93:799-813     Reference: February 15th, 2018
Gene Product: January 8th, 2018
Gene Model: January 8th, 2018
5 days agotacs1 terminal acidic SANT 1: cDNA expressed in meristems; similar to rice anther indehiscence1 (aid1) gene
2.08
GRMZM2G035356
Marian, CO; Bass, HW. 2005. Biochim Biophys Acta. 14:81-86     Reference: February 7th, 2005
Variation: February 14th, 2018
Gene Model: February 14th, 2018
Recommended by Ed Coe:
January 8th, 2008
5 days agoga1 gametophyte factor1: (was ga9) Ga1 pollen grains are competitively superior to ga1 on Ga1 silks; Ga1-S (strong) super-gametophyte
4.02 - 4.03
   Jones, ZG; Goodman, MM. 2018. Crop Sci 58:doi: 10.2135/cropsci2017.09.0560     Reference: February 14th, 2018
Variation: June 22nd, 2005
5 days agomybr98 MYB-related-transcription factor 98: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: February 14th, 2018
5 days agotcb1 teosinte crossing barrier1: Barrier to crossing of maize onto Central Plateau teosinte - transferred to maize with linked positive modifiers, fails to accept any pollen, including Ga1-s
4.04
   Jones, ZG; Goodman, MM. 2018. Crop Sci 58:doi: 10.2135/cropsci2017.09.0560     Reference: February 14th, 2018
Variation: May 19th, 2006
7 days agohm1 Helminthosporium carbonum susceptibility1: disease lesions vs. yellowish flecks (Hm1, resistant) on leaves with Cochliobolus carbonum race 1
1.06
   Meeley, RB; Walton, JD. 1993. Advances in Molecular Genetics of Plant-Microbe Interactions 2:463-467     Reference: February 12th, 2018
Gene Product: May 23rd, 2014
Variation: September 1st, 2003
7 days agohm2 Helminthosporium carbonum susceptibility2: dominant Hm2 plants resistant to Cochliobolus carbonum; like Hm1, masked by Hm1
9.03 - 9.04
   Meeley, RB; Walton, JD. 1993. Advances in Molecular Genetics of Plant-Microbe Interactions 2:463-467     Reference: February 12th, 2018
Gene Product: May 23rd, 2014
Variation: October 5th, 2007
9 days agorp1 resistance to Puccinia sorghi1: dominant Rp1 resistant
10.01
GRMZM2G069382
Hu, Y et al. 2018. Frontiers Plant Sci 9:110     Reference: February 10th, 2018
Variation: April 1st, 2015
Gene Model: January 8th, 2018
11 days agoo11 opaque endosperm11: thin, opaque, somewhat shrunken kernels with greyish cast
 
GRMZM2G147685
Feng, F et al. 2018. Plant Cell pp.doi: 10.1105/tpc.17.00616   AT1G49770 (TAIR) Reference: February 8th, 2018
Gene Product: September 14th, 2016
Variation: February 8th, 2018
Gene Model: February 8th, 2018
11 days agobhlh175 bHLH-transcription factor 175: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Feng, F et al. 2018. Plant Cell pp.doi: 10.1105/tpc.17.00616   AT3G26744 (TAIR) Reference: February 8th, 2018
Gene Product: September 14th, 2016
12 days agoakin2 AKINbetagamma-1 protein kinase2:
1.03
   Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Variation: September 25th, 2007
12 days agobhlh148 bHLH-transcription factor 148: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
   Shi, QB et al. 2018. Frontiers Plant Sci 8:2273     Reference: February 7th, 2018
Variation: September 25th, 2007
12 days agora3 ramosa3: branched inflorescence; mutant ears have abnormal long branches at their bases; trehalose biosynthesis
7.06
   Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Variation: December 3rd, 2010
12 days agobhlh43 bHLH-transcription factor 43: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.08
GRMZM2G165042
Shi, QB et al. 2018. Frontiers Plant Sci 8:2273     Reference: February 7th, 2018
Variation: September 1st, 2003
Gene Model: July 6th, 2017
12 days agosweet15a sugars will eventually be exported transporter15a:
4.05
GRMZM2G168365
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: November 4th, 2015
Variation: September 1st, 2003
Gene Model: November 3rd, 2015
12 days agopif3 phytochrome interacting factor3: ortholog of Arabidopsis PIF3; nuclear localized protein; transgenic expression in rice suggest role in stress response (Gao Y et al 2015)
 
GRMZM2G387528
Shi, QB et al. 2018. Frontiers Plant Sci 8:2273   AT1G09530 (TAIR)
LOC_Os05g04740 (MSU/TIGR)
Reference: February 7th, 2018
Gene Product: September 14th, 2016
Gene Model: May 26th, 2015
12 days agosweet11 sugars will eventually be exported transporter11:
1.06
GRMZM2G368827
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
12 days agotrpp2 trehalose-6-phosphate phosphatase2:
 
GRMZM2G140078
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrpp7 trehalose-6-phosphate phosphatase7:
 
GRMZM2G055150
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrpp8 trehalose-6-phosphate phosphatase8:
 
GRMZM2G174396
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrpp11 trehalose-6-phosphate phosphatase11:
 
GRMZM2G178546
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrps4 trehalose-6-phosphate synthase4:
 
GRMZM2G008226
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrps5 trehalose-6-phosphate synthase5:
 
GRMZM2G527891
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrps7 trehalose-6-phosphate synthase7:
 
GRMZM2G123277
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrps9 trehalose-6-phosphate synthase9:
 
GRMZM2G366659
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrps10 trehalose-6-phosphate synthase10:
 
GRMZM2G312521
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrps11 trehalose-6-phosphate synthase11:
 
GRMZM2G122231
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agotrps13 trehalose-6-phosphate synthase13:
 
GRMZM2G019183
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
12 days agosweet1b sugars will eventually be exported transporter1b:
 
GRMZM2G153358
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
12 days agosweet2 sugars will eventually be exported transporter2:
 
GRMZM2G324903
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
12 days agosweet3a sugars will eventually be exported transporter3a:
 
GRMZM2G179679
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
12 days agosweet14b sugars will eventually be exported transporter14b:
 
GRMZM2G015976
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
12 days agosweet15b sugars will eventually be exported transporter15b:
 
GRMZM5G872392
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
12 days agosweet16 sugars will eventually be exported transporter16:
 
GRMZM2G107597
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
12 days agoalla1 allantoinase1:
 
GRMZM2G173413
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: February 7th, 2018
Gene Model: February 7th, 2018
12 days agotrpp6 trehalose-6-phosphate phosphatase6:
5.06
GRMZM2G112830
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: September 15th, 2013
Gene Model: February 7th, 2018
13 days agohrg1 hydroxyproline rich glycoprotein1: cDNA, genomic clones, peptide sequence, single site (Southern analysis), accumulates in dividing cells, preferentially in provascular cells
2.04
GRMZM2G168651
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: February 6th, 2018
13 days agorf3 restorer of fertility3: dominant Rf3 restores fertility to cms-S
2.09
   Ren, R et al. 2018. US Patent 9883643     Reference: February 6th, 2018
Gene Product: December 27th, 2016
Variation: September 1st, 2003
13 days agoask2 aspartate kinase2:
2.06
GRMZM2G052935
Wang, X et al. 2007. J Exp Bot 58:2653-2660     Reference: September 9th, 2010
Gene Product: September 1st, 2003
Variation: February 6th, 2018
Gene Model: February 6th, 2018
13 days agohb75 Homeobox-transcription factor 75: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
GRMZM2G001289
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: February 6th, 2018
13 days agogif1 growth-regulating-factor-interacting factor1: mutants are semi-dwarf with narrow leaves and fasciated inflorescence meristems
1.10
GRMZM2G180246
Zhang, D et al. 2018. Plant Cell pp.doi: 10.1105/tpc.17.00791   AT5G28640 (TAIR)
LOC_Os03g52320 (MSU/TIGR)
Reference: February 6th, 2018
Gene Product: July 6th, 2015
Variation: February 6th, 2018
Gene Model: July 6th, 2015
17 days agoast91 anti-sigma factor antagonist domain of sulfate transporter91:
2.02
GRMZM2G395114
Huang, Q et al. 2018. J Plant Physiol 220:24-33   AT1G23090 (TAIR)
LOC_Os04g55800 (MSU/TIGR)
Reference: November 14th, 2017
Variation: February 2nd, 2018
Gene Model: February 2nd, 2018
17 days agobnl17.14  : Received as pio200075, but detected no linkage with 10S.
2.10
GRMZM2G345270
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: February 2nd, 2018
17 days agobnl6.20  :
2.08
GRMZM2G056612
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: February 2nd, 2018
17 days agomybr51 MYB-related-transcription factor 51:
5.09
GRMZM5G811428
Xu, YJ et al. 2018. Plant Cell Rep pp.doi: 10.1007/s00299-018-2262-0     Reference: February 2nd, 2018
Variation: September 1st, 2003
Gene Model: February 2nd, 2018
17 days agoga2ox4 gibberellin 2-oxidase4:
 
GRMZM2G153359
Coan, MMD et al. 2018. Crop Sci pp.doi: 10.2135/cropsci2017.05.0322     Reference: February 2nd, 2018
Gene Product: October 27th, 2014
Gene Model: October 27th, 2014
17 days agoglk58 G2-like-transcription factor 58: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
6.06
GRMZM2G117854
Xu, YJ et al. 2018. Plant Cell Rep pp.doi: 10.1007/s00299-018-2262-0     Reference: February 2nd, 2018
Variation: September 25th, 2007
Gene Model: February 2nd, 2018
18 days agoasrp2 arginine/serine-rich splicing factor2: RNA binding nuclear splicing protein
2.05
GRMZM2G021223
Gupta, S et al. 2005. Biochim Biophys Acta 1728:105-114     Reference: March 16th, 2009
Variation: February 7th, 2009
Gene Model: February 1st, 2018
18 days agoAY110410  :
2.07
GRMZM5G808017
    Variation: July 29th, 2004
Gene Model: February 1st, 2018
18 days agoAY110535  :
2.00
GRMZM2G348959
    Variation: September 25th, 2007
Gene Model: February 1st, 2018
18 days agoBE640649  :
2.02
GRMZM2G305007
    Variation: July 29th, 2004
Gene Model: February 1st, 2018
18 days agohda108 histone deacetylase: mutant plants exhibit many developmental defects: significant reduction in plant height, alterations of shoot and leaf development, alterations of inflorescence patterning and fertility
4.05
   Forestan, C et al. 2018. Genetics pp.doi: 10.1534/genetics.117.300625     Reference: February 1st, 2018
Gene Product: September 1st, 2003
Variation: February 1st, 2018
18 days agobass1 bile acid sodium symporter1: encodes a plastidial pantoate transporter
 
GRMZM2G123884
Huang, L et al. 2018. Biochem J pp.doi: 10.1042/BCJ20170883   At1g78560 (TAIR) Reference: February 1st, 2018
Gene Product: February 1st, 2018
Gene Model: February 1st, 2018
18 days agoslac1 slow anion channel-associated1: mutants exhibited strong insensitive phenotypes of stomatal closure in response to diverse stimuli
 
GRMZM2G106881
Qi, G-N et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy015     Reference: February 1st, 2018
Gene Product: February 1st, 2018
Variation: February 1st, 2018
Gene Model: February 1st, 2018
18 days agoslac3 slow anion channel-associated3:
 
GRMZM2G447657
Qi, G-N et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy015     Reference: February 1st, 2018
Gene Product: February 1st, 2018
Gene Model: February 1st, 2018
18 days agoslac4 slow anion channel-associated4:
 
GRMZM2G169951
Qi, G-N et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy015     Reference: February 1st, 2018
Gene Product: February 1st, 2018
Gene Model: February 1st, 2018
18 days agoslac2 slow anion channel-associated2:
6.05
GRMZM2G061469
Qi, G-N et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy015     Reference: February 1st, 2018
Gene Product: February 1st, 2018
Gene Model: February 1st, 2018
19 days agozep1 zeaxanthin epoxidase1:
2.04
GRMZM2G127139
Azmach, G et al. 2018. G3 pp.doi: 10.1534/g3.117.300511     Reference: January 31st, 2018
Gene Product: December 10th, 2011
Variation: August 29th, 2011
Gene Model: April 8th, 2013
19 days agolyce1 lycopene epsilon cyclase1: determines qualitative composition of endosperm carotenoids
8.05
GRMZM2G012966
Azmach, G et al. 2018. G3 pp.doi: 10.1534/g3.117.300511     Reference: January 31st, 2018
Gene Product: December 10th, 2011
Variation: October 3rd, 2011
Gene Model: October 3rd, 2011
19 days agoAY109603  :
2.02
GRMZM2G070881
    Variation: July 29th, 2004
Gene Model: January 31st, 2018
19 days agoAY109981  :
2.06
GRMZM2G100484
    Variation: July 29th, 2004
Gene Model: January 31st, 2018
19 days agoAY110266  : similar to M. truncatula N-acetyltransferase ESCO2
2.04
GRMZM2G081689
    Variation: September 25th, 2007
Gene Model: January 31st, 2018
19 days agoAY110389  :
2.09
GRMZM2G012326
    Variation: September 25th, 2007
Gene Model: January 31st, 2018
19 days agohyd3 hydroxylase3: beta-carotene hydroxylase
 
GRMZM2G152135
Azmach, G et al. 2018. G3 pp.doi: 10.1534/g3.117.300511     Reference: January 31st, 2018
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
Gene Model: April 9th, 2013
20 days agoAI668346  :
2.08
GRMZM2G464000
    Variation: July 29th, 2004
Gene Model: January 30th, 2018
20 days agoAW681281  : similar to Arabidopsis TPLATE protein
2.05
GRMZM2G472770
    Variation: July 29th, 2004
Gene Model: January 30th, 2018
20 days agoAY104214  : similar to M. truncatula DEAD-box ATP-dependent RNA helicase
2.03
GRMZM2G059365
    Variation: September 25th, 2007
Gene Model: January 30th, 2018
20 days agoAY109586  :
2.10
GRMZM2G096814
    Variation: July 29th, 2004
Gene Model: January 30th, 2018
21 days agoae1 amylose extender1: glassy, tarnished endosperm; high amylose content; application: highly linear starch is used for food films, fibers, and other industrial purposes
5.04
   Subasinghe, RM et al. 2014. Plant Physiol Biochem 83C:168-179     Reference: November 7th, 2014
Gene Product: June 6th, 2011
Variation: January 29th, 2018
25 days agocct1 CO CO-LIKE TIMING OF CAB1 protein domain1: photoperiod response locus; confers later flowering in teosintes under longer day lengths; many maize inbred lines, including some adapted to tropical regions, have cct1 alleles insensitive to photoperiod (Hung et al 2012)
 
GRMZM2G381691
Zhang, ZH et al. 2018. Plant J pp.doi: 10.1111/tpj.13828   AT5G24930 (TAIR)
LOC_Os07g15770 (MSU/TIGR)
Os07g0261200 (Gramene)
Reference: January 25th, 2018
Gene Product: December 27th, 2017
Variation: December 27th, 2017
Gene Model: July 17th, 2012
25 days agosrs4 SHI/STY (SRS)-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sanchez, DL et al. 2018. Plant Sci 268:30-38     Reference: January 25th, 2018
Gene Product: April 27th, 2015
25 days agomkk4 MAP kinase kinase4: function inferred from sequence similarity, and gene expression analyses.
 
GRMZM5G878379
Sanchez, DL et al. 2018. Plant Sci 268:30-38     Reference: January 25th, 2018
Gene Product: July 10th, 2013
Gene Model: July 28th, 2016
25 days agonlp15 NLP-transcription factor 15: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.03
GRMZM2G042278
Wang, ZK et al. 2018. Physiol Plant pp.doi: 10.1111/ppl.12696     Reference: January 25th, 2018
Variation: March 31st, 2005
Gene Model: October 7th, 2017
27 days agocchh35 Cys2His2 Zinc Finger35: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
10.02
GRMZM2G068710
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: April 4th, 2017
Gene Model: January 23rd, 2018
27 days agocchh3 Cys2His2 Zinc Finger3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.05
GRMZM2G023988
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: April 4th, 2017
Gene Model: January 23rd, 2018
27 days agocchh1 Cys2His2 Zinc Finger1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
8.05
GRMZM2G380515
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: April 4th, 2017
Gene Model: January 23rd, 2018
28 days agocpps2 copalyl diphosphate synthase2: encodes ent-kaurene synthase, a copalyl diphosphate synthase protein having close identity with An1 gene product; likely duplicate function explains why an1 plants are not fully dwarfed (Harris et al. 2005)
1.04
GRMZM2G044481
Christensen, SA et al. 2018. J Exp Bot pp.doi: 10.1093/jxb/erx495     Reference: January 22nd, 2018
Gene Product: August 16th, 2012
Variation: January 22nd, 2018
Gene Model: September 12th, 2011
Recommended by Ed Coe:
January 8th, 2008
30 days agod3 dwarf plant3: like d1, plant short and compact; "d2" mutation(s) are allelic (d2 is lapsed)
9.03
GRMZM2G093195
Wang, BB et al. 2018. BMC Plant Biology 18:17     Reference: January 20th, 2018
Gene Product: August 15th, 2012
Variation: May 19th, 2006
Gene Model: August 15th, 2012
30 days agod5 dwarf plant5: like d1
2.02
   Wang, BB et al. 2018. BMC Plant Biology 18:17     Reference: January 20th, 2018
Gene Product: September 1st, 2003
Variation: December 3rd, 2015
30 days agona1 nana plant1: short, erect dwarf; no response to gibberellins
3.06 - 3.08
GRMZM2G449033
Wang, BB et al. 2018. BMC Plant Biology 18:17     Reference: January 20th, 2018
Gene Product: July 24th, 2012
Variation: December 22nd, 2016
Gene Model: December 20th, 2011
30 days agora1 ramosa1: ear and tassel many-branched; tassel branches taper to tip
7.02
   Wang, BB et al. 2018. BMC Plant Biology 18:17     Reference: January 20th, 2018
Gene Product: April 11th, 2007
Variation: August 20th, 2010
30 days agotd1 thick tassel dwarf1: shortened plants, fasciated ears, increased spikelet density in tassel
5.03
GRMZM2G300133
Wang, BB et al. 2018. BMC Plant Biology 18:17     Reference: January 20th, 2018
Gene Product: October 22nd, 2012
Variation: October 23rd, 2012
Gene Model: October 22nd, 2012
30 days agomyb151 MYB-transcription factor 151: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Wang, BB et al. 2018. BMC Plant Biology 18:17   AT4G37780 (TAIR) Reference: January 20th, 2018
Gene Product: July 25th, 2017
30 days agosbp21 SBP-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Wang, BB et al. 2018. BMC Plant Biology 18:17   AT1G27370 (TAIR) Reference: January 20th, 2018
Gene Product: December 18th, 2014
30 days agozfl2 Zea floricaula leafy2: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
2.02
   Wang, BB et al. 2018. BMC Plant Biology 18:17     Reference: January 20th, 2018
Variation: October 9th, 2014
30 days agozap1 zea apetala homolog1:
2.10
   Wang, BB et al. 2018. BMC Plant Biology 18:17     Reference: January 20th, 2018
Variation: February 2nd, 2011

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